Analysis of interatomic Contacts of Structural Units in PDB entry:
8VAP

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8VAP entry

There are 7 chains in PDB entry 8VAP (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	MET 1	HIS 333
B	MET 1	HIS 360
C	MET 1	PRO 368
D	SER 2	PHE 359
E	MET 1	LEU 334
F	GLY -2	LEU 366
G	LEU 119	LEU 366

There are119 helices in PDB entry 8VAP. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	5	14	Right-handed alpha
Helix 2	AA2	A	27	45	Right-handed alpha
Helix 3	AA3	A	60	69	Right-handed alpha
Helix 4	AA4	A	90	103	Right-handed alpha
Helix 5	AA5	A	118	123	Right-handed alpha
Helix 6	AA6	A	124	130	Right-handed alpha
Helix 7	AA7	A	146	158	Right-handed alpha
Helix 8	AA8	A	163	174	Right-handed alpha
Helix 9	AA9	A	177	192	Right-handed alpha
Helix 10	AB1	A	198	204	Right-handed alpha
Helix 11	AB2	A	213	224	Right-handed alpha
Helix 12	AB3	A	225	240	Right-handed alpha
Helix 13	AB4	A	242	265	Right-handed alpha
Helix 14	AB5	A	268	276	Right-handed alpha
Helix 15	AB6	A	279	293	Right-handed alpha
Helix 16	AB7	A	294	314	Right-handed alpha
Helix 17	AB8	A	319	332	Right-handed alpha
Helix 18	AB9	B	5	10	Right-handed alpha
Helix 19	AC1	B	14	18	Right-handed 310
Helix 20	AC2	B	21	34	Right-handed alpha
Helix 21	AC3	B	50	63	Right-handed alpha
Helix 22	AC4	B	76	84	Right-handed alpha
Helix 23	AC5	B	96	99	Right-handed 310
Helix 24	AC6	B	100	109	Right-handed alpha
Helix 25	AC7	B	127	131	Right-handed 310
Helix 26	AC8	B	132	145	Right-handed alpha
Helix 27	AC9	B	158	162	Right-handed 310
Helix 28	AD1	B	163	169	Right-handed 310
Helix 29	AD2	B	179	195	Right-handed alpha
Helix 30	AD3	B	199	211	Right-handed alpha
Helix 31	AD4	B	213	229	Right-handed alpha
Helix 32	AD5	B	233	244	Right-handed alpha
Helix 33	AD6	B	247	258	Right-handed alpha
Helix 34	AD7	B	260	275	Right-handed alpha
Helix 35	AD8	B	277	298	Right-handed alpha
Helix 36	AD9	B	299	302	Right-handed 310
Helix 37	AE1	B	309	320	Right-handed alpha
Helix 38	AE2	B	321	339	Right-handed alpha
Helix 39	AE3	B	344	359	Right-handed alpha
Helix 40	AE4	C	5	10	Right-handed alpha
Helix 41	AE5	C	21	35	Right-handed alpha
Helix 42	AE6	C	50	63	Right-handed alpha
Helix 43	AE7	C	76	84	Right-handed alpha
Helix 44	AE8	C	96	98	Right-handed 310
Helix 45	AE9	C	100	109	Right-handed alpha
Helix 46	AF1	C	128	131	Right-handed 310
Helix 47	AF2	C	132	139	Right-handed alpha
Helix 48	AF3	C	139	145	Right-handed alpha
Helix 49	AF4	C	158	162	Right-handed 310
Helix 50	AF5	C	163	169	Right-handed alpha
Helix 51	AF6	C	179	194	Right-handed alpha
Helix 52	AF7	C	199	210	Right-handed alpha
Helix 53	AF8	C	213	228	Right-handed alpha
Helix 54	AF9	C	233	242	Right-handed alpha
Helix 55	AG1	C	245	259	Right-handed alpha
Helix 56	AG2	C	260	273	Right-handed alpha
Helix 57	AG3	C	277	298	Right-handed alpha
Helix 58	AG4	C	306	308	Right-handed 310
Helix 59	AG5	C	309	320	Right-handed alpha
Helix 60	AG6	C	321	339	Right-handed alpha
Helix 61	AG7	C	340	342	Right-handed 310
Helix 62	AG8	C	344	359	Right-handed alpha
Helix 63	AG9	D	5	10	Right-handed alpha
Helix 64	AH1	D	14	18	Right-handed 310
Helix 65	AH2	D	21	35	Right-handed alpha
Helix 66	AH3	D	50	63	Right-handed alpha
Helix 67	AH4	D	76	84	Right-handed alpha
Helix 68	AH5	D	100	111	Right-handed alpha
Helix 69	AH6	D	128	131	Right-handed 310
Helix 70	AH7	D	132	139	Right-handed alpha
Helix 71	AH8	D	139	145	Right-handed alpha
Helix 72	AH9	D	158	162	Right-handed 310
Helix 73	AI1	D	163	169	Right-handed alpha
Helix 74	AI2	D	179	194	Right-handed alpha
Helix 75	AI3	D	199	210	Right-handed alpha
Helix 76	AI4	D	213	227	Right-handed alpha
Helix 77	AI5	D	233	242	Right-handed alpha
Helix 78	AI6	D	245	258	Right-handed alpha
Helix 79	AI7	D	260	274	Right-handed alpha
Helix 80	AI8	D	277	298	Right-handed alpha
Helix 81	AI9	D	309	320	Right-handed alpha
Helix 82	AJ1	D	321	339	Right-handed alpha
Helix 83	AJ2	D	340	342	Right-handed 310
Helix 84	AJ3	D	344	358	Right-handed alpha
Helix 85	AJ4	E	4	6	Right-handed 310
Helix 86	AJ5	E	7	20	Right-handed alpha
Helix 87	AJ6	E	36	50	Right-handed alpha
Helix 88	AJ7	E	62	71	Right-handed alpha
Helix 89	AJ8	E	89	101	Right-handed alpha
Helix 90	AJ9	E	116	120	Right-handed 310
Helix 91	AK1	E	121	134	Right-handed alpha
Helix 92	AK2	E	147	151	Right-handed 310
Helix 93	AK3	E	152	157	Right-handed alpha
Helix 94	AK4	E	168	180	Right-handed alpha
Helix 95	AK5	E	183	194	Right-handed alpha
Helix 96	AK6	E	197	207	Right-handed alpha
Helix 97	AK7	E	208	224	Right-handed alpha
Helix 98	AK8	E	228	231	Right-handed 310
Helix 99	AK9	E	232	237	Right-handed alpha
Helix 100	AL1	E	240	260	Right-handed alpha
Helix 101	AL2	E	270	281	Right-handed alpha
Helix 102	AL3	E	282	303	Right-handed alpha
Helix 103	AL4	E	307	324	Right-handed alpha
Helix 104	AL5	F	7	17	Right-handed alpha
Helix 105	AL6	F	28	30	Right-handed 310
Helix 106	AL7	F	72	82	Right-handed alpha
Helix 107	AL8	F	112	116	Right-handed 310
Helix 108	AL9	F	131	143	Right-handed alpha
Helix 109	AM1	F	152	157	Right-handed 310
Helix 110	AM2	F	196	207	Right-handed alpha
Helix 111	AM3	F	244	248	Right-handed 310
Helix 112	AM4	F	260	272	Right-handed alpha
Helix 113	AM5	F	320	332	Right-handed alpha
Helix 114	AM6	G	132	143	Right-handed alpha
Helix 115	AM7	G	152	155	Right-handed 310
Helix 116	AM8	G	197	207	Right-handed alpha
Helix 117	AM9	G	243	248	Right-handed alpha
Helix 118	AN1	G	260	271	Right-handed alpha
Helix 119	AN2	G	320	331	Right-handed alpha

There are 13 sheets in PDB entry 8VAP. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	2	4	first strand
Strand 2	A	135	138	parallel
Strand 3	A	20	24	parallel
Strand 4	A	109	114	parallel
Strand 5	A	79	83	parallel
Strand 6	A	52	54	parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	161	162	first strand
Strand 2	A	196	197	parallel

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There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	90	94	first strand
Strand 2	B	121	126	parallel
Strand 3	B	150	156	parallel
Strand 4	B	40	44	parallel
Strand 5	B	171	174	parallel

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There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	90	94	first strand
Strand 2	C	121	126	parallel
Strand 3	C	150	156	parallel
Strand 4	C	40	45	parallel
Strand 5	C	171	175	parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	197	198	first strand
Strand 2	C	231	232	parallel

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There are 5 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	90	94	first strand
Strand 2	D	121	126	parallel
Strand 3	D	150	156	parallel
Strand 4	D	40	45	parallel
Strand 5	D	171	175	parallel

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There are 5 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	76	79	first strand
Strand 2	E	110	114	parallel
Strand 3	E	139	145	parallel
Strand 4	E	26	30	parallel
Strand 5	E	160	163	parallel

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There are 8 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	3	6	first strand
Strand 2	F	87	93	anti-parallel
Strand 3	F	96	101	anti-parallel
Strand 4	F	104	109	anti-parallel
Strand 5	G	301	306	anti-parallel
Strand 6	G	290	294	anti-parallel
Strand 7	G	281	285	anti-parallel
Strand 8	G	315	319	anti-parallel

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There are 8 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	66	71	first strand
Strand 2	F	32	38	anti-parallel
Strand 3	F	41	47	anti-parallel
Strand 4	F	51	58	anti-parallel
Strand 5	F	230	235	anti-parallel
Strand 6	F	222	226	anti-parallel
Strand 7	F	215	218	anti-parallel
Strand 8	F	126	129	anti-parallel

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There are 7 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	309	310	first strand
Strand 2	F	256	259	anti-parallel
Strand 3	F	335	339	anti-parallel
Strand 4	F	347	351	anti-parallel
Strand 5	F	357	361	anti-parallel
Strand 6	F	176	195	anti-parallel
Strand 7	F	158	173	anti-parallel

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There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	301	306	first strand
Strand 2	F	289	295	anti-parallel
Strand 3	F	282	286	anti-parallel
Strand 4	F	315	318	anti-parallel

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There are 4 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	126	131	first strand
Strand 2	G	213	218	anti-parallel
Strand 3	G	222	227	anti-parallel
Strand 4	G	230	235	anti-parallel

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There are 6 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	254	259	first strand
Strand 2	G	335	340	anti-parallel
Strand 3	G	347	351	anti-parallel
Strand 4	G	357	361	anti-parallel
Strand 5	G	176	196	anti-parallel
Strand 6	G	157	172	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8VAP

Analysis of interatomic Contacts of Structural Units in PDB entry:
8VAP