Analysis of interatomic Contacts of Structural Units in PDB entry:
8VAR

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8VAR entry

There are 9 chains in PDB entry 8VAR (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	MET 1	GLY 343
B	MET 1	ARG 362
C	MET 1	GLU 367
D	SER 2	PRO 361
E	MET 1	LEU 334
F	GLY -2	LEU 366
G	GLY -2	LEU 366
H	G 1	A 20
I	T 4	C 30

There are117 helices in PDB entry 8VAR. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	5	7	Right-handed 310
Helix 2	AA2	A	8	16	Right-handed alpha
Helix 3	AA3	A	27	46	Right-handed alpha
Helix 4	AA4	A	62	67	Right-handed 310
Helix 5	AA5	A	90	103	Right-handed alpha
Helix 6	AA6	A	118	123	Right-handed alpha
Helix 7	AA7	A	124	131	Right-handed alpha
Helix 8	AA8	A	146	158	Right-handed alpha
Helix 9	AA9	A	164	174	Right-handed alpha
Helix 10	AB1	A	177	192	Right-handed alpha
Helix 11	AB2	A	198	203	Right-handed alpha
Helix 12	AB3	A	213	224	Right-handed alpha
Helix 13	AB4	A	225	240	Right-handed alpha
Helix 14	AB5	A	242	265	Right-handed alpha
Helix 15	AB6	A	268	276	Right-handed alpha
Helix 16	AB7	A	282	293	Right-handed alpha
Helix 17	AB8	A	294	314	Right-handed alpha
Helix 18	AB9	A	319	331	Right-handed alpha
Helix 19	AC1	B	5	10	Right-handed alpha
Helix 20	AC2	B	14	18	Right-handed 310
Helix 21	AC3	B	21	34	Right-handed alpha
Helix 22	AC4	B	50	63	Right-handed alpha
Helix 23	AC5	B	76	84	Right-handed alpha
Helix 24	AC6	B	100	109	Right-handed alpha
Helix 25	AC7	B	110	113	Right-handed 310
Helix 26	AC8	B	128	131	Right-handed 310
Helix 27	AC9	B	132	145	Right-handed alpha
Helix 28	AD1	B	158	162	Right-handed 310
Helix 29	AD2	B	163	168	Right-handed alpha
Helix 30	AD3	B	179	194	Right-handed alpha
Helix 31	AD4	B	199	210	Right-handed alpha
Helix 32	AD5	B	213	228	Right-handed alpha
Helix 33	AD6	B	233	245	Right-handed alpha
Helix 34	AD7	B	247	259	Right-handed alpha
Helix 35	AD8	B	260	274	Right-handed alpha
Helix 36	AD9	B	277	298	Right-handed alpha
Helix 37	AE1	B	299	302	Right-handed 310
Helix 38	AE2	B	306	308	Right-handed 310
Helix 39	AE3	B	309	319	Right-handed alpha
Helix 40	AE4	B	321	338	Right-handed alpha
Helix 41	AE5	B	339	342	Right-handed 310
Helix 42	AE6	B	344	359	Right-handed alpha
Helix 43	AE7	C	5	10	Right-handed alpha
Helix 44	AE8	C	14	18	Right-handed 310
Helix 45	AE9	C	21	35	Right-handed alpha
Helix 46	AF1	C	50	64	Right-handed alpha
Helix 47	AF2	C	76	85	Right-handed alpha
Helix 48	AF3	C	96	98	Right-handed 310
Helix 49	AF4	C	100	110	Right-handed alpha
Helix 50	AF5	C	128	131	Right-handed 310
Helix 51	AF6	C	132	145	Right-handed alpha
Helix 52	AF7	C	158	162	Right-handed 310
Helix 53	AF8	C	163	169	Right-handed alpha
Helix 54	AF9	C	179	194	Right-handed alpha
Helix 55	AG1	C	199	210	Right-handed alpha
Helix 56	AG2	C	214	228	Right-handed alpha
Helix 57	AG3	C	233	242	Right-handed alpha
Helix 58	AG4	C	247	258	Right-handed alpha
Helix 59	AG5	C	260	274	Right-handed alpha
Helix 60	AG6	C	277	298	Right-handed alpha
Helix 61	AG7	C	303	305	Right-handed 310
Helix 62	AG8	C	306	320	Right-handed alpha
Helix 63	AG9	C	321	339	Right-handed alpha
Helix 64	AH1	C	340	342	Right-handed 310
Helix 65	AH2	C	344	359	Right-handed alpha
Helix 66	AH3	D	21	34	Right-handed alpha
Helix 67	AH4	D	50	63	Right-handed alpha
Helix 68	AH5	D	76	85	Right-handed alpha
Helix 69	AH6	D	100	110	Right-handed alpha
Helix 70	AH7	D	128	131	Right-handed 310
Helix 71	AH8	D	132	145	Right-handed alpha
Helix 72	AH9	D	163	170	Right-handed alpha
Helix 73	AI1	D	179	195	Right-handed alpha
Helix 74	AI2	D	199	210	Right-handed alpha
Helix 75	AI3	D	213	227	Right-handed alpha
Helix 76	AI4	D	233	242	Right-handed alpha
Helix 77	AI5	D	247	259	Right-handed alpha
Helix 78	AI6	D	260	275	Right-handed alpha
Helix 79	AI7	D	277	298	Right-handed alpha
Helix 80	AI8	D	299	302	Right-handed 310
Helix 81	AI9	D	309	320	Right-handed alpha
Helix 82	AJ1	D	321	339	Right-handed alpha
Helix 83	AJ2	D	344	358	Right-handed alpha
Helix 84	AJ3	E	6	20	Right-handed alpha
Helix 85	AJ4	E	37	50	Right-handed alpha
Helix 86	AJ5	E	62	71	Right-handed alpha
Helix 87	AJ6	E	89	101	Right-handed alpha
Helix 88	AJ7	E	116	120	Right-handed 310
Helix 89	AJ8	E	121	134	Right-handed alpha
Helix 90	AJ9	E	147	151	Right-handed 310
Helix 91	AK1	E	152	159	Right-handed alpha
Helix 92	AK2	E	168	180	Right-handed alpha
Helix 93	AK3	E	183	194	Right-handed alpha
Helix 94	AK4	E	199	207	Right-handed alpha
Helix 95	AK5	E	208	224	Right-handed alpha
Helix 96	AK6	E	225	227	Right-handed 310
Helix 97	AK7	E	232	237	Right-handed alpha
Helix 98	AK8	E	240	260	Right-handed alpha
Helix 99	AK9	E	270	281	Right-handed alpha
Helix 100	AL1	E	282	303	Right-handed alpha
Helix 101	AL2	E	307	324	Right-handed alpha
Helix 102	AL3	F	7	18	Right-handed alpha
Helix 103	AL4	F	28	30	Right-handed 310
Helix 104	AL5	F	72	82	Right-handed alpha
Helix 105	AL6	F	131	143	Right-handed alpha
Helix 106	AL7	F	144	146	Right-handed 310
Helix 107	AL8	F	197	206	Right-handed alpha
Helix 108	AL9	F	260	272	Right-handed alpha
Helix 109	AM1	F	320	332	Right-handed alpha
Helix 110	AM2	G	10	19	Right-handed alpha
Helix 111	AM3	G	71	80	Right-handed alpha
Helix 112	AM4	G	112	116	Right-handed 310
Helix 113	AM5	G	131	141	Right-handed alpha
Helix 114	AM6	G	197	207	Right-handed alpha
Helix 115	AM7	G	243	248	Right-handed alpha
Helix 116	AM8	G	260	272	Right-handed alpha
Helix 117	AM9	G	321	332	Right-handed alpha

There are 12 sheets in PDB entry 8VAR. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	2	4	first strand
Strand 2	A	135	139	parallel
Strand 3	A	20	25	parallel
Strand 4	A	108	114	parallel
Strand 5	A	77	83	parallel
Strand 6	A	47	54	parallel

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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	91	94	first strand
Strand 2	B	121	126	parallel
Strand 3	B	150	156	parallel
Strand 4	B	40	44	parallel
Strand 5	B	171	174	parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	197	198	first strand
Strand 2	B	231	232	parallel

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There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	91	94	first strand
Strand 2	C	123	126	parallel
Strand 3	C	152	155	parallel
Strand 4	C	40	45	parallel
Strand 5	C	171	175	parallel

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There are 5 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	90	94	first strand
Strand 2	D	121	126	parallel
Strand 3	D	150	156	parallel
Strand 4	D	40	44	parallel
Strand 5	D	171	174	parallel

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There are 5 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	76	79	first strand
Strand 2	E	110	114	parallel
Strand 3	E	139	144	parallel
Strand 4	E	26	29	parallel
Strand 5	E	160	162	parallel

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There are 8 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	3	6	first strand
Strand 2	F	87	93	anti-parallel
Strand 3	F	96	101	anti-parallel
Strand 4	F	104	109	anti-parallel
Strand 5	G	299	306	anti-parallel
Strand 6	G	289	296	anti-parallel
Strand 7	G	280	286	anti-parallel
Strand 8	G	317	320	anti-parallel

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There are 9 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	111	112	first strand
Strand 2	F	66	71	anti-parallel
Strand 3	F	32	38	anti-parallel
Strand 4	F	41	47	anti-parallel
Strand 5	F	51	58	anti-parallel
Strand 6	F	230	235	anti-parallel
Strand 7	F	222	227	anti-parallel
Strand 8	F	214	218	anti-parallel
Strand 9	F	126	130	anti-parallel

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There are 9 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	191	196	first strand
Strand 2	F	157	163	anti-parallel
Strand 3	F	166	172	anti-parallel
Strand 4	F	176	182	anti-parallel
Strand 5	F	357	361	anti-parallel
Strand 6	F	347	351	anti-parallel
Strand 7	F	335	340	anti-parallel
Strand 8	F	254	259	anti-parallel
Strand 9	F	309	311	anti-parallel

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There are 8 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	315	319	first strand
Strand 2	F	281	286	anti-parallel
Strand 3	F	289	296	anti-parallel
Strand 4	F	300	307	anti-parallel
Strand 5	G	104	109	anti-parallel
Strand 6	G	96	101	anti-parallel
Strand 7	G	87	93	anti-parallel
Strand 8	G	3	6	anti-parallel

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There are 8 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	66	70	first strand
Strand 2	G	33	38	anti-parallel
Strand 3	G	41	47	anti-parallel
Strand 4	G	51	58	anti-parallel
Strand 5	G	230	235	anti-parallel
Strand 6	G	222	227	anti-parallel
Strand 7	G	214	218	anti-parallel
Strand 8	G	126	130	anti-parallel

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There are 8 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	191	196	first strand
Strand 2	G	157	163	anti-parallel
Strand 3	G	166	172	anti-parallel
Strand 4	G	176	183	anti-parallel
Strand 5	G	357	361	anti-parallel
Strand 6	G	347	351	anti-parallel
Strand 7	G	335	340	anti-parallel
Strand 8	G	254	259	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8VAR

Analysis of interatomic Contacts of Structural Units in PDB entry:
8VAR