Analysis of interatomic Contacts of Structural Units in PDB entry:
8VAV

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8VAV entry

There are 8 chains in PDB entry 8VAV (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	VAL 12	ASN 328
B	VAL 12	ASN 328
C	VAL 12	ASN 328
D	VAL 12	ASN 328
E	PRO 41	ARG 293
F	PRO 41	ARG 293
G	PRO 41	ARG 293
H	PRO 41	ARG 293

There are 72 helices in PDB entry 8VAV. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	21	46	Right-handed alpha
Helix 2	AA2	A	94	105	Right-handed alpha
Helix 3	AA3	A	109	134	Right-handed alpha
Helix 4	AA4	A	148	170	Right-handed alpha
Helix 5	AA5	A	173	179	Right-handed alpha
Helix 6	AA6	A	180	200	Right-handed alpha
Helix 7	AA7	A	207	215	Right-handed 310
Helix 8	AA8	A	216	223	Right-handed alpha
Helix 9	AA9	A	229	260	Right-handed alpha
Helix 10	AB1	A	273	286	Right-handed alpha
Helix 11	AB2	A	297	327	Right-handed alpha
Helix 12	AB3	B	21	46	Right-handed alpha
Helix 13	AB4	B	94	105	Right-handed alpha
Helix 14	AB5	B	109	134	Right-handed alpha
Helix 15	AB6	B	148	170	Right-handed alpha
Helix 16	AB7	B	173	179	Right-handed alpha
Helix 17	AB8	B	180	200	Right-handed alpha
Helix 18	AB9	B	207	215	Right-handed 310
Helix 19	AC1	B	216	223	Right-handed alpha
Helix 20	AC2	B	229	260	Right-handed alpha
Helix 21	AC3	B	273	286	Right-handed alpha
Helix 22	AC4	B	297	327	Right-handed alpha
Helix 23	AC5	C	21	46	Right-handed alpha
Helix 24	AC6	C	94	105	Right-handed alpha
Helix 25	AC7	C	109	134	Right-handed alpha
Helix 26	AC8	C	148	170	Right-handed alpha
Helix 27	AC9	C	173	179	Right-handed alpha
Helix 28	AD1	C	180	200	Right-handed alpha
Helix 29	AD2	C	207	215	Right-handed 310
Helix 30	AD3	C	216	223	Right-handed alpha
Helix 31	AD4	C	229	260	Right-handed alpha
Helix 32	AD5	C	273	286	Right-handed alpha
Helix 33	AD6	C	297	327	Right-handed alpha
Helix 34	AD7	D	21	46	Right-handed alpha
Helix 35	AD8	D	94	105	Right-handed alpha
Helix 36	AD9	D	109	134	Right-handed alpha
Helix 37	AE1	D	148	170	Right-handed alpha
Helix 38	AE2	D	173	179	Right-handed alpha
Helix 39	AE3	D	180	200	Right-handed alpha
Helix 40	AE4	D	207	215	Right-handed 310
Helix 41	AE5	D	216	223	Right-handed alpha
Helix 42	AE6	D	229	260	Right-handed alpha
Helix 43	AE7	D	273	286	Right-handed alpha
Helix 44	AE8	D	297	327	Right-handed alpha
Helix 45	AE9	E	159	164	Right-handed alpha
Helix 46	AF1	E	185	190	Right-handed alpha
Helix 47	AF2	E	206	208	Right-handed 310
Helix 48	AF3	E	209	219	Right-handed alpha
Helix 49	AF4	E	222	229	Right-handed alpha
Helix 50	AF5	E	246	251	Right-handed alpha
Helix 51	AF6	E	258	293	Right-handed alpha
Helix 52	AF7	F	159	164	Right-handed alpha
Helix 53	AF8	F	185	190	Right-handed alpha
Helix 54	AF9	F	206	208	Right-handed 310
Helix 55	AG1	F	209	219	Right-handed alpha
Helix 56	AG2	F	222	229	Right-handed alpha
Helix 57	AG3	F	246	251	Right-handed alpha
Helix 58	AG4	F	258	293	Right-handed alpha
Helix 59	AG5	G	159	164	Right-handed alpha
Helix 60	AG6	G	185	190	Right-handed alpha
Helix 61	AG7	G	206	208	Right-handed 310
Helix 62	AG8	G	209	219	Right-handed alpha
Helix 63	AG9	G	222	229	Right-handed alpha
Helix 64	AH1	G	246	251	Right-handed alpha
Helix 65	AH2	G	258	293	Right-handed alpha
Helix 66	AH3	H	159	164	Right-handed alpha
Helix 67	AH4	H	185	190	Right-handed alpha
Helix 68	AH5	H	206	208	Right-handed 310
Helix 69	AH6	H	209	219	Right-handed alpha
Helix 70	AH7	H	222	229	Right-handed alpha
Helix 71	AH8	H	246	251	Right-handed alpha
Helix 72	AH9	H	258	293	Right-handed alpha

There are 12 sheets in PDB entry 8VAV. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	139	141	first strand
Strand 2	A	201	203	anti-parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	139	141	first strand
Strand 2	B	201	203	anti-parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	139	141	first strand
Strand 2	C	201	203	anti-parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	139	141	first strand
Strand 2	D	201	203	anti-parallel

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There are 8 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	48	50	first strand
Strand 2	E	54	56	anti-parallel
Strand 3	E	75	77	parallel
Strand 4	E	99	101	parallel
Strand 5	E	123	125	parallel
Strand 6	E	147	149	parallel
Strand 7	E	171	173	parallel
Strand 8	E	195	197	parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	85	86	first strand
Strand 2	E	109	110	parallel

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There are 8 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	48	50	first strand
Strand 2	F	54	56	anti-parallel
Strand 3	F	75	77	parallel
Strand 4	F	99	101	parallel
Strand 5	F	123	125	parallel
Strand 6	F	147	149	parallel
Strand 7	F	171	173	parallel
Strand 8	F	195	197	parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	85	86	first strand
Strand 2	F	109	110	parallel

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There are 8 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	48	50	first strand
Strand 2	G	54	56	anti-parallel
Strand 3	G	75	77	parallel
Strand 4	G	99	101	parallel
Strand 5	G	123	125	parallel
Strand 6	G	147	149	parallel
Strand 7	G	171	173	parallel
Strand 8	G	195	197	parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	85	86	first strand
Strand 2	G	109	110	parallel

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There are 8 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	48	50	first strand
Strand 2	H	54	56	anti-parallel
Strand 3	H	75	77	parallel
Strand 4	H	99	101	parallel
Strand 5	H	123	125	parallel
Strand 6	H	147	149	parallel
Strand 7	H	171	173	parallel
Strand 8	H	195	197	parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	85	86	first strand
Strand 2	H	109	110	parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8VAV

Analysis of interatomic Contacts of Structural Units in PDB entry:
8VAV