Analysis of interatomic Contacts of Structural Units in PDB entry:
8VAZ

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8VAZ entry

There are 8 chains in PDB entry 8VAZ (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	ARG 20	SER 1057
B	ARG 20	SER 1057
C	ARG 20	SER 1057
D	ARG 20	SER 1057
E	ALA 258	ARG 293
F	ALA 258	ARG 293
G	ALA 258	ARG 293
H	ALA 258	ARG 293

There are173 helices in PDB entry 8VAZ. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	21	46	Right-handed alpha
Helix 2	AA2	A	94	105	Right-handed alpha
Helix 3	AA3	A	109	134	Right-handed alpha
Helix 4	AA4	A	147	170	Right-handed alpha
Helix 5	AA5	A	173	179	Right-handed alpha
Helix 6	AA6	A	180	200	Right-handed alpha
Helix 7	AA7	A	206	215	Right-handed 310
Helix 8	AA8	A	216	224	Right-handed alpha
Helix 9	AA9	A	229	260	Right-handed alpha
Helix 10	AB1	A	261	265	Right-handed 310
Helix 11	AB2	A	273	286	Right-handed alpha
Helix 12	AB3	A	297	327	Right-handed alpha
Helix 13	AB4	A	352	364	Right-handed alpha
Helix 14	AB5	A	384	394	Right-handed alpha
Helix 15	AB6	A	407	414	Right-handed alpha
Helix 16	AB7	A	432	451	Right-handed alpha
Helix 17	AB8	A	462	472	Right-handed 310
Helix 18	AB9	A	476	480	Right-handed 310
Helix 19	AC1	A	486	500	Right-handed alpha
Helix 20	AC2	A	502	511	Right-handed alpha
Helix 21	AC3	A	523	533	Right-handed alpha
Helix 22	AC4	A	542	546	Right-handed 310
Helix 23	AC5	A	549	560	Right-handed alpha
Helix 24	AC6	A	603	609	Right-handed 310
Helix 25	AC7	A	699	704	Right-handed alpha
Helix 26	AC8	A	706	713	Right-handed alpha
Helix 27	AC9	A	734	739	Right-handed alpha
Helix 28	AD1	A	740	743	Right-handed 310
Helix 29	AD2	A	759	767	Right-handed alpha
Helix 30	AD3	A	768	770	Right-handed 310
Helix 31	AD4	A	785	792	Right-handed alpha
Helix 32	AD5	A	812	816	Right-handed 310
Helix 33	AD6	A	817	829	Right-handed alpha
Helix 34	AD7	A	872	876	Right-handed 310
Helix 35	AD8	A	884	892	Right-handed 310
Helix 36	AD9	A	902	905	Right-handed 310
Helix 37	AE1	A	906	911	Right-handed alpha
Helix 38	AE2	A	917	930	Right-handed alpha
Helix 39	AE3	A	931	942	Right-handed alpha
Helix 40	AE4	A	946	957	Right-handed alpha
Helix 41	AE5	A	965	973	Right-handed alpha
Helix 42	AE6	A	995	1007	Right-handed alpha
Helix 43	AE7	A	1019	1021	Right-handed 310
Helix 44	AE8	B	21	46	Right-handed alpha
Helix 45	AE9	B	94	105	Right-handed alpha
Helix 46	AF1	B	109	134	Right-handed alpha
Helix 47	AF2	B	147	170	Right-handed alpha
Helix 48	AF3	B	173	179	Right-handed alpha
Helix 49	AF4	B	180	200	Right-handed alpha
Helix 50	AF5	B	206	215	Right-handed 310
Helix 51	AF6	B	216	224	Right-handed alpha
Helix 52	AF7	B	229	260	Right-handed alpha
Helix 53	AF8	B	261	265	Right-handed 310
Helix 54	AF9	B	273	286	Right-handed alpha
Helix 55	AG1	B	297	327	Right-handed alpha
Helix 56	AG2	B	352	364	Right-handed alpha
Helix 57	AG3	B	384	394	Right-handed alpha
Helix 58	AG4	B	407	414	Right-handed alpha
Helix 59	AG5	B	432	451	Right-handed alpha
Helix 60	AG6	B	462	472	Right-handed 310
Helix 61	AG7	B	476	480	Right-handed 310
Helix 62	AG8	B	486	500	Right-handed alpha
Helix 63	AG9	B	502	511	Right-handed alpha
Helix 64	AH1	B	523	533	Right-handed alpha
Helix 65	AH2	B	542	546	Right-handed 310
Helix 66	AH3	B	549	560	Right-handed alpha
Helix 67	AH4	B	603	609	Right-handed 310
Helix 68	AH5	B	699	704	Right-handed alpha
Helix 69	AH6	B	706	713	Right-handed alpha
Helix 70	AH7	B	734	739	Right-handed alpha
Helix 71	AH8	B	740	743	Right-handed 310
Helix 72	AH9	B	759	767	Right-handed alpha
Helix 73	AI1	B	768	770	Right-handed 310
Helix 74	AI2	B	785	792	Right-handed alpha
Helix 75	AI3	B	812	816	Right-handed 310
Helix 76	AI4	B	817	829	Right-handed alpha
Helix 77	AI5	B	872	876	Right-handed 310
Helix 78	AI6	B	884	892	Right-handed 310
Helix 79	AI7	B	902	905	Right-handed 310
Helix 80	AI8	B	906	911	Right-handed alpha
Helix 81	AI9	B	917	930	Right-handed alpha
Helix 82	AJ1	B	931	942	Right-handed alpha
Helix 83	AJ2	B	946	957	Right-handed alpha
Helix 84	AJ3	B	965	973	Right-handed alpha
Helix 85	AJ4	B	995	1007	Right-handed alpha
Helix 86	AJ5	C	21	46	Right-handed alpha
Helix 87	AJ6	C	94	105	Right-handed alpha
Helix 88	AJ7	C	109	134	Right-handed alpha
Helix 89	AJ8	C	147	170	Right-handed alpha
Helix 90	AJ9	C	173	179	Right-handed alpha
Helix 91	AK1	C	180	200	Right-handed alpha
Helix 92	AK2	C	206	215	Right-handed 310
Helix 93	AK3	C	216	224	Right-handed alpha
Helix 94	AK4	C	229	260	Right-handed alpha
Helix 95	AK5	C	261	265	Right-handed 310
Helix 96	AK6	C	273	286	Right-handed alpha
Helix 97	AK7	C	297	327	Right-handed alpha
Helix 98	AK8	C	352	364	Right-handed alpha
Helix 99	AK9	C	384	394	Right-handed alpha
Helix 100	AL1	C	407	414	Right-handed alpha
Helix 101	AL2	C	432	451	Right-handed alpha
Helix 102	AL3	C	462	472	Right-handed 310
Helix 103	AL4	C	476	480	Right-handed 310
Helix 104	AL5	C	486	500	Right-handed alpha
Helix 105	AL6	C	502	511	Right-handed alpha
Helix 106	AL7	C	523	533	Right-handed alpha
Helix 107	AL8	C	542	546	Right-handed 310
Helix 108	AL9	C	549	560	Right-handed alpha
Helix 109	AM1	C	603	609	Right-handed 310
Helix 110	AM2	C	699	704	Right-handed alpha
Helix 111	AM3	C	706	713	Right-handed alpha
Helix 112	AM4	C	734	739	Right-handed alpha
Helix 113	AM5	C	740	743	Right-handed 310
Helix 114	AM6	C	759	767	Right-handed alpha
Helix 115	AM7	C	768	770	Right-handed 310
Helix 116	AM8	C	785	792	Right-handed alpha
Helix 117	AM9	C	812	816	Right-handed 310
Helix 118	AN1	C	817	829	Right-handed alpha
Helix 119	AN2	C	872	876	Right-handed 310
Helix 120	AN3	C	884	892	Right-handed 310
Helix 121	AN4	C	902	905	Right-handed 310
Helix 122	AN5	C	906	911	Right-handed alpha
Helix 123	AN6	C	917	930	Right-handed alpha
Helix 124	AN7	C	931	942	Right-handed alpha
Helix 125	AN8	C	946	957	Right-handed alpha
Helix 126	AN9	C	965	973	Right-handed alpha
Helix 127	AO1	C	995	1007	Right-handed alpha
Helix 128	AO2	D	21	46	Right-handed alpha
Helix 129	AO3	D	94	105	Right-handed alpha
Helix 130	AO4	D	109	134	Right-handed alpha
Helix 131	AO5	D	147	170	Right-handed alpha
Helix 132	AO6	D	173	179	Right-handed alpha
Helix 133	AO7	D	180	200	Right-handed alpha
Helix 134	AO8	D	206	215	Right-handed 310
Helix 135	AO9	D	216	224	Right-handed alpha
Helix 136	AP1	D	229	260	Right-handed alpha
Helix 137	AP2	D	261	265	Right-handed 310
Helix 138	AP3	D	273	286	Right-handed alpha
Helix 139	AP4	D	297	327	Right-handed alpha
Helix 140	AP5	D	352	364	Right-handed alpha
Helix 141	AP6	D	384	394	Right-handed alpha
Helix 142	AP7	D	407	414	Right-handed alpha
Helix 143	AP8	D	432	451	Right-handed alpha
Helix 144	AP9	D	462	472	Right-handed 310
Helix 145	AQ1	D	476	480	Right-handed 310
Helix 146	AQ2	D	486	500	Right-handed alpha
Helix 147	AQ3	D	502	511	Right-handed alpha
Helix 148	AQ4	D	523	533	Right-handed alpha
Helix 149	AQ5	D	542	546	Right-handed 310
Helix 150	AQ6	D	549	560	Right-handed alpha
Helix 151	AQ7	D	603	609	Right-handed 310
Helix 152	AQ8	D	699	704	Right-handed alpha
Helix 153	AQ9	D	706	713	Right-handed alpha
Helix 154	AR1	D	734	739	Right-handed alpha
Helix 155	AR2	D	740	743	Right-handed 310
Helix 156	AR3	D	759	767	Right-handed alpha
Helix 157	AR4	D	768	770	Right-handed 310
Helix 158	AR5	D	785	792	Right-handed alpha
Helix 159	AR6	D	812	816	Right-handed 310
Helix 160	AR7	D	817	829	Right-handed alpha
Helix 161	AR8	D	872	876	Right-handed 310
Helix 162	AR9	D	884	892	Right-handed 310
Helix 163	AS1	D	902	905	Right-handed 310
Helix 164	AS2	D	906	911	Right-handed alpha
Helix 165	AS3	D	917	930	Right-handed alpha
Helix 166	AS4	D	931	942	Right-handed alpha
Helix 167	AS5	D	946	957	Right-handed alpha
Helix 168	AS6	D	965	973	Right-handed alpha
Helix 169	AS7	D	995	1007	Right-handed alpha
Helix 170	AS8	E	259	293	Right-handed alpha
Helix 171	AS9	F	259	293	Right-handed alpha
Helix 172	AT1	G	259	293	Right-handed alpha
Helix 173	AT2	H	259	293	Right-handed alpha

There are 24 sheets in PDB entry 8VAZ. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	139	141	first strand
Strand 2	A	201	203	anti-parallel

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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	398	401	first strand
Strand 2	A	373	378	parallel
Strand 3	A	343	349	parallel
Strand 4	A	421	425	parallel
Strand 5	A	455	460	parallel
Strand 6	A	482	485	parallel

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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	535	540	first strand
Strand 2	A	594	599	anti-parallel
Strand 3	A	564	571	anti-parallel
Strand 4	A	577	581	anti-parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	686	687	first strand
Strand 2	A	961	962	anti-parallel

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There are 6 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	776	780	first strand
Strand 2	A	754	758	parallel
Strand 3	A	719	724	parallel
Strand 4	A	799	804	parallel
Strand 5	A	878	882	parallel
Strand 6	A	914	916	parallel

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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	975	981	first strand
Strand 2	A	1047	1054	anti-parallel
Strand 3	A	1010	1017	anti-parallel
Strand 4	A	1031	1035	anti-parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	139	141	first strand
Strand 2	B	201	203	anti-parallel

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There are 6 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	398	401	first strand
Strand 2	B	373	378	parallel
Strand 3	B	343	349	parallel
Strand 4	B	421	425	parallel
Strand 5	B	455	460	parallel
Strand 6	B	482	485	parallel

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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	535	540	first strand
Strand 2	B	594	599	anti-parallel
Strand 3	B	564	572	anti-parallel
Strand 4	B	576	581	anti-parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	686	687	first strand
Strand 2	B	961	962	anti-parallel

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There are 6 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	776	780	first strand
Strand 2	B	754	758	parallel
Strand 3	B	719	724	parallel
Strand 4	B	799	804	parallel
Strand 5	B	878	882	parallel
Strand 6	B	914	916	parallel

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There are 4 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	975	981	first strand
Strand 2	B	1047	1054	anti-parallel
Strand 3	B	1010	1017	anti-parallel
Strand 4	B	1031	1035	anti-parallel

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There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	139	141	first strand
Strand 2	C	201	203	anti-parallel

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There are 6 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	398	401	first strand
Strand 2	C	373	378	parallel
Strand 3	C	343	349	parallel
Strand 4	C	421	425	parallel
Strand 5	C	455	460	parallel
Strand 6	C	482	485	parallel

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There are 4 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	535	540	first strand
Strand 2	C	594	599	anti-parallel
Strand 3	C	564	572	anti-parallel
Strand 4	C	576	581	anti-parallel

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There are 2 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	686	687	first strand
Strand 2	C	961	962	anti-parallel

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There are 6 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	776	780	first strand
Strand 2	C	754	758	parallel
Strand 3	C	719	724	parallel
Strand 4	C	799	804	parallel
Strand 5	C	878	882	parallel
Strand 6	C	914	916	parallel

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There are 4 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	975	981	first strand
Strand 2	C	1047	1054	anti-parallel
Strand 3	C	1010	1017	anti-parallel
Strand 4	C	1031	1035	anti-parallel

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There are 2 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	139	141	first strand
Strand 2	D	201	203	anti-parallel

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There are 6 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	398	401	first strand
Strand 2	D	373	378	parallel
Strand 3	D	343	349	parallel
Strand 4	D	421	425	parallel
Strand 5	D	455	460	parallel
Strand 6	D	482	485	parallel

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There are 4 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	535	540	first strand
Strand 2	D	594	599	anti-parallel
Strand 3	D	564	572	anti-parallel
Strand 4	D	576	581	anti-parallel

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There are 2 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	686	687	first strand
Strand 2	D	961	962	anti-parallel

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There are 6 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	776	780	first strand
Strand 2	D	754	758	parallel
Strand 3	D	719	724	parallel
Strand 4	D	799	804	parallel
Strand 5	D	878	882	parallel
Strand 6	D	914	916	parallel

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There are 4 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	975	981	first strand
Strand 2	D	1047	1054	anti-parallel
Strand 3	D	1010	1017	anti-parallel
Strand 4	D	1031	1035	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8VAZ

Analysis of interatomic Contacts of Structural Units in PDB entry:
8VAZ