Analysis of interatomic Contacts of Structural Units in PDB entry:
8VB0

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8VB0 entry

There are 14 chains in PDB entry 8VB0 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	ASP 3	PRO 327
B	SER 2	PRO 327
C	SER 2	PRO 327
D	SER 2	PRO 327
E	SER 2	PRO 327
F	ASP 3	PRO 327
G	SER 2	PRO 327
H	ALA 2	ALA 62
I	ALA 2	ALA 62
J	VAL 4	GLY 58
K	GLY 6	GLY 61
L	ALA 2	ALA 62
M	ALA 2	ALA 62
N	SER 2	GLY 58

There are 88 helices in PDB entry 8VB0. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	6	10	Right-handed 310
Helix 2	AA2	A	104	108	Right-handed alpha
Helix 3	AA3	A	113	140	Right-handed alpha
Helix 4	AA4	A	141	143	Right-handed 310
Helix 5	AA5	A	146	153	Right-handed 310
Helix 6	AA6	A	166	188	Right-handed alpha
Helix 7	AA7	A	189	194	Right-handed 310
Helix 8	AA8	A	202	210	Right-handed alpha
Helix 9	AA9	A	264	266	Right-handed 310
Helix 10	AB1	A	314	317	Right-handed 310
Helix 11	AB2	B	6	10	Right-handed 310
Helix 12	AB3	B	104	108	Right-handed alpha
Helix 13	AB4	B	113	139	Right-handed alpha
Helix 14	AB5	B	146	150	Right-handed 310
Helix 15	AB6	B	166	187	Right-handed alpha
Helix 16	AB7	B	188	189	Right-handed 310
Helix 17	AB8	B	190	194	Right-handed 310
Helix 18	AB9	B	202	210	Right-handed alpha
Helix 19	AC1	B	217	222	Right-handed alpha
Helix 20	AC2	B	262	267	Right-handed alpha
Helix 21	AC3	B	295	297	Right-handed 310
Helix 22	AC4	B	314	316	Right-handed 310
Helix 23	AC5	C	6	10	Right-handed 310
Helix 24	AC6	C	104	109	Right-handed alpha
Helix 25	AC7	C	113	140	Right-handed alpha
Helix 26	AC8	C	141	143	Right-handed 310
Helix 27	AC9	C	146	150	Right-handed 310
Helix 28	AD1	C	166	188	Right-handed alpha
Helix 29	AD2	C	193	196	Right-handed 310
Helix 30	AD3	C	202	210	Right-handed alpha
Helix 31	AD4	C	256	260	Right-handed 310
Helix 32	AD5	C	264	266	Right-handed 310
Helix 33	AD6	C	274	278	Right-handed alpha
Helix 34	AD7	C	295	297	Right-handed 310
Helix 35	AD8	C	314	316	Right-handed 310
Helix 36	AD9	D	6	10	Right-handed 310
Helix 37	AE1	D	113	140	Right-handed alpha
Helix 38	AE2	D	141	143	Right-handed 310
Helix 39	AE3	D	166	187	Right-handed alpha
Helix 40	AE4	D	202	207	Right-handed alpha
Helix 41	AE5	D	226	230	Right-handed 310
Helix 42	AE6	D	314	317	Right-handed 310
Helix 43	AE7	E	104	108	Right-handed alpha
Helix 44	AE8	E	113	140	Right-handed alpha
Helix 45	AE9	E	141	143	Right-handed 310
Helix 46	AF1	E	149	153	Right-handed 310
Helix 47	AF2	E	166	188	Right-handed alpha
Helix 48	AF3	E	190	196	Right-handed 310
Helix 49	AF4	E	202	210	Right-handed alpha
Helix 50	AF5	E	264	266	Right-handed 310
Helix 51	AF6	F	4	8	Right-handed 310
Helix 52	AF7	F	104	109	Right-handed alpha
Helix 53	AF8	F	113	140	Right-handed alpha
Helix 54	AF9	F	141	143	Right-handed 310
Helix 55	AG1	F	146	150	Right-handed 310
Helix 56	AG2	F	166	188	Right-handed alpha
Helix 57	AG3	F	189	194	Right-handed 310
Helix 58	AG4	F	256	260	Right-handed 310
Helix 59	AG5	F	314	317	Right-handed 310
Helix 60	AG6	G	104	108	Right-handed alpha
Helix 61	AG7	G	113	140	Right-handed alpha
Helix 62	AG8	G	141	143	Right-handed 310
Helix 63	AG9	G	146	153	Right-handed 310
Helix 64	AH1	G	166	188	Right-handed alpha
Helix 65	AH2	G	190	196	Right-handed 310
Helix 66	AH3	G	202	210	Right-handed alpha
Helix 67	AH4	G	224	230	Right-handed alpha
Helix 68	AH5	G	256	260	Right-handed 310
Helix 69	AH6	G	262	267	Right-handed alpha
Helix 70	AH7	G	295	297	Right-handed 310
Helix 71	AH8	G	314	316	Right-handed 310
Helix 72	AH9	H	7	34	Right-handed alpha
Helix 73	AI1	H	39	61	Right-handed alpha
Helix 74	AI2	I	7	34	Right-handed alpha
Helix 75	AI3	I	39	61	Right-handed alpha
Helix 76	AI4	J	7	26	Right-handed alpha
Helix 77	AI5	J	26	31	Right-handed alpha
Helix 78	AI6	J	36	55	Right-handed alpha
Helix 79	AI7	K	7	34	Right-handed alpha
Helix 80	AI8	K	39	61	Right-handed alpha
Helix 81	AI9	L	7	30	Right-handed alpha
Helix 82	AJ1	L	39	60	Right-handed alpha
Helix 83	AJ2	M	7	29	Right-handed alpha
Helix 84	AJ3	M	29	34	Right-handed alpha
Helix 85	AJ4	M	39	61	Right-handed alpha
Helix 86	AJ5	N	7	25	Right-handed alpha
Helix 87	AJ6	N	26	29	Right-handed 310
Helix 88	AJ7	N	44	58	Right-handed alpha

There are 33 sheets in PDB entry 8VB0. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1, AD2, AD3, AD4, AD5, AD6,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	15	16	first strand
Strand 2	A	22	23	anti-parallel

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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	29	34	first strand
Strand 2	B	58	64	parallel
Strand 3	B	85	91	anti-parallel

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There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	48	51	first strand
Strand 2	A	279	294	parallel
Strand 3	A	299	312	anti-parallel
Strand 4	A	95	103	anti-parallel
Strand 5	B	70	72	anti-parallel

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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	85	91	first strand
Strand 2	A	58	64	anti-parallel
Strand 3	F	33	34	parallel

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There are 5 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	70	72	first strand
Strand 2	F	95	103	anti-parallel
Strand 3	F	299	312	anti-parallel
Strand 4	F	279	294	anti-parallel
Strand 5	F	48	51	parallel

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There are 6 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	157	162	first strand
Strand 2	A	319	324	parallel
Strand 3	A	268	273	anti-parallel
Strand 4	A	198	201	anti-parallel
Strand 5	A	238	242	parallel
Strand 6	A	234	235	anti-parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	251	253	first strand
Strand 2	A	256	261	anti-parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	15	16	first strand
Strand 2	B	22	23	anti-parallel

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There are 3 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	28	34	first strand
Strand 2	C	58	64	parallel
Strand 3	C	85	91	anti-parallel

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There are 5 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	48	51	first strand
Strand 2	B	279	294	parallel
Strand 3	B	299	312	anti-parallel
Strand 4	B	95	103	anti-parallel
Strand 5	C	70	72	anti-parallel

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There are 6 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	157	162	first strand
Strand 2	B	318	324	parallel
Strand 3	B	268	273	anti-parallel
Strand 4	B	198	201	anti-parallel
Strand 5	B	238	242	parallel
Strand 6	B	234	235	anti-parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	251	253	first strand
Strand 2	B	256	261	anti-parallel

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There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	15	16	first strand
Strand 2	C	22	23	anti-parallel

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There are 3 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	29	34	first strand
Strand 2	D	58	64	parallel
Strand 3	D	85	91	anti-parallel

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There are 5 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	48	51	first strand
Strand 2	C	279	294	parallel
Strand 3	C	299	312	anti-parallel
Strand 4	C	95	103	anti-parallel
Strand 5	D	70	72	anti-parallel

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There are 6 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	157	162	first strand
Strand 2	C	318	324	parallel
Strand 3	C	268	273	anti-parallel
Strand 4	C	198	201	anti-parallel
Strand 5	C	238	242	parallel
Strand 6	C	234	235	anti-parallel

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There are 2 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	15	16	first strand
Strand 2	D	22	23	anti-parallel

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There are 3 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	33	34	first strand
Strand 2	E	58	64	parallel
Strand 3	E	85	91	anti-parallel

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There are 5 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	48	51	first strand
Strand 2	D	279	294	parallel
Strand 3	D	299	312	anti-parallel
Strand 4	D	95	103	anti-parallel
Strand 5	E	70	72	anti-parallel

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There are 6 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	157	162	first strand
Strand 2	D	319	324	parallel
Strand 3	D	268	273	anti-parallel
Strand 4	D	198	201	anti-parallel
Strand 5	D	238	242	parallel
Strand 6	D	234	235	anti-parallel

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There are 2 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	251	253	first strand
Strand 2	D	256	261	anti-parallel

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There are 2 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	15	16	first strand
Strand 2	E	22	23	anti-parallel

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There are 3 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	29	34	first strand
Strand 2	F	58	64	parallel
Strand 3	F	85	91	anti-parallel

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There are 5 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	48	51	first strand
Strand 2	E	279	294	parallel
Strand 3	E	299	312	anti-parallel
Strand 4	E	95	103	anti-parallel
Strand 5	F	70	72	anti-parallel

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There are 6 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	157	162	first strand
Strand 2	E	319	324	parallel
Strand 3	E	268	273	anti-parallel
Strand 4	E	198	201	anti-parallel
Strand 5	E	238	242	parallel
Strand 6	E	234	235	anti-parallel

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There are 2 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	251	253	first strand
Strand 2	E	256	261	anti-parallel

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There are 2 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	15	16	first strand
Strand 2	F	22	23	anti-parallel

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There are 6 strands in AD1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	157	162	first strand
Strand 2	F	319	324	parallel
Strand 3	F	268	273	anti-parallel
Strand 4	F	198	201	anti-parallel
Strand 5	F	238	242	parallel
Strand 6	F	234	235	anti-parallel

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There are 2 strands in AD2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	225	226	first strand
Strand 2	F	231	232	anti-parallel

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There are 2 strands in AD3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	15	16	first strand
Strand 2	G	22	23	anti-parallel

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There are 4 strands in AD4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	49	51	first strand
Strand 2	G	279	294	parallel
Strand 3	G	299	312	anti-parallel
Strand 4	G	95	103	anti-parallel

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There are 2 strands in AD5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	58	64	first strand
Strand 2	G	85	91	anti-parallel

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There are 6 strands in AD6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	157	162	first strand
Strand 2	G	318	324	parallel
Strand 3	G	268	273	anti-parallel
Strand 4	G	198	201	anti-parallel
Strand 5	G	238	242	parallel
Strand 6	G	234	235	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8VB0

Analysis of interatomic Contacts of Structural Units in PDB entry:
8VB0