Analysis of interatomic Contacts of Structural Units in PDB entry:
8VB3


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8VB3 entry

There are 4 chains in PDB entry 8VB3 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 LYS -2PHE 118
A
 PHE 120ALA 238
B
 MET 1PHE 118
B
 PHE 120ALA 238
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 16 helices in PDB entry 8VB3. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
42 55Right-handed alpha
Helix 2
AA2
A
73 86Right-handed alpha
Helix 3
AA3
A
87 105Right-handed alpha
Helix 4
AA4
A
119 131Right-handed alpha
Helix 5
AA5
A
149 153Right-handed 310
Helix 6
AA6
A
172 186Right-handed alpha
Helix 7
AA7
A
204 210Right-handed 310
Helix 8
AA8
A
218 237Right-handed alpha
Helix 9
AA9
B
42 55Right-handed alpha
Helix 10
AB1
B
73 86Right-handed alpha
Helix 11
AB2
B
87 104Right-handed alpha
Helix 12
AB3
B
119 131Right-handed alpha
Helix 13
AB4
B
149 153Right-handed 310
Helix 14
AB5
B
172 186Right-handed alpha
Helix 15
AB6
B
204 210Right-handed 310
Helix 16
AB7
B
218 237Right-handed alpha
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There is 1 sheet (AA1) in PDB entry 8VB3.

There are 16 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
2 10first strand
Strand 2
A
13 21anti-parallel
Strand 3
A
58 61anti-parallel
Strand 4
A
29 35parallel
Strand 5
A
108 118parallel
Strand 6
A
137 141parallel
Strand 7
A
159 165parallel
Strand 8
A
190 195parallel
Strand 9
B
190 195anti-parallel
Strand 10
B
159 165parallel
Strand 11
B
137 141parallel
Strand 12
B
108 118parallel
Strand 13
B
29 35parallel
Strand 14
B
58 61parallel
Strand 15
B
13 21anti-parallel
Strand 16
B
2 10anti-parallel
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