Analysis of interatomic Contacts of Structural Units in PDB entry:
8VB8

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8VB8 entry

There are 5 chains in PDB entry 8VB8 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	PRO 1	SER 553
B	THR 7	TYR 427
F	A -3	C 1
F	C 3	C 3
F	C 5	G 33

There are 31 helices in PDB entry 8VB8. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	27	44	Right-handed alpha
Helix 2	AA2	A	79	84	Right-handed alpha
Helix 3	AA3	A	96	100	Right-handed 310
Helix 4	AA4	A	114	118	Right-handed 310
Helix 5	AA5	A	121	125	Right-handed 310
Helix 6	AA6	A	155	175	Right-handed alpha
Helix 7	AA7	A	194	211	Right-handed alpha
Helix 8	AA8	A	217	221	Right-handed 310
Helix 9	AA9	A	254	268	Right-handed alpha
Helix 10	AB1	A	276	282	Right-handed alpha
Helix 11	AB2	A	298	310	Right-handed alpha
Helix 12	AB3	A	363	384	Right-handed alpha
Helix 13	AB4	A	394	403	Right-handed alpha
Helix 14	AB5	A	475	488	Right-handed alpha
Helix 15	AB6	A	499	508	Right-handed alpha
Helix 16	AB7	A	515	528	Right-handed alpha
Helix 17	AB8	A	544	552	Right-handed alpha
Helix 18	AB9	B	27	33	Right-handed alpha
Helix 19	AC1	B	34	44	Right-handed alpha
Helix 20	AC2	B	77	85	Right-handed alpha
Helix 21	AC3	B	121	125	Right-handed 310
Helix 22	AC4	B	134	138	Right-handed 310
Helix 23	AC5	B	154	160	Right-handed alpha
Helix 24	AC6	B	160	168	Right-handed alpha
Helix 25	AC7	B	168	173	Right-handed alpha
Helix 26	AC8	B	194	213	Right-handed alpha
Helix 27	AC9	B	235	239	Right-handed 310
Helix 28	AD1	B	253	271	Right-handed alpha
Helix 29	AD2	B	296	312	Right-handed alpha
Helix 30	AD3	B	364	383	Right-handed alpha
Helix 31	AD4	B	394	406	Right-handed alpha

There are 14 sheets in PDB entry 8VB8. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	47	49	first strand
Strand 2	A	142	146	anti-parallel
Strand 3	A	129	132	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	60	64	first strand
Strand 2	A	71	75	anti-parallel

Back to list of sheets
Back to top of page

There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	105	110	first strand
Strand 2	A	186	191	anti-parallel
Strand 3	A	178	183	anti-parallel

Back to list of sheets
Back to top of page

There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	227	229	first strand
Strand 2	A	232	234	anti-parallel
Strand 3	A	239	241	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	252	253	first strand
Strand 2	A	292	293	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	347	354	first strand
Strand 2	A	337	344	anti-parallel
Strand 3	A	326	331	anti-parallel
Strand 4	A	388	390	parallel

Back to list of sheets
Back to top of page

There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	361	362	first strand
Strand 2	A	512	513	anti-parallel

Back to list of sheets
Back to top of page

There are 3 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	439	441	first strand
Strand 2	A	492	497	parallel
Strand 3	A	530	535	parallel

Back to list of sheets
Back to top of page

There are 3 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	443	446	first strand
Strand 2	A	452	456	anti-parallel
Strand 3	A	466	470	anti-parallel

Back to list of sheets
Back to top of page

There are 3 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	47	49	first strand
Strand 2	B	142	146	anti-parallel
Strand 3	B	129	132	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	60	64	first strand
Strand 2	B	71	75	anti-parallel

Back to list of sheets
Back to top of page

There are 3 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	105	110	first strand
Strand 2	B	186	191	anti-parallel
Strand 3	B	179	182	anti-parallel

Back to list of sheets
Back to top of page

There are 3 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	329	331	first strand
Strand 2	B	337	344	anti-parallel
Strand 3	B	347	352	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	389	391	first strand
Strand 2	B	414	416	parallel

Back to list of sheets
Back to top of page

Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8VB8

Analysis of interatomic Contacts of Structural Units in PDB entry:
8VB8