Analysis of interatomic Contacts of Structural Units in PDB entry:
8VBC

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8VBC entry

There are 5 chains in PDB entry 8VBC (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	PRO 1	ALA 538
B	THR 7	TYR 427
F	A -2	C 1
F	C 3	C 3
F	C 5	G 33

There are 27 helices in PDB entry 8VBC. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	27	45	Right-handed alpha
Helix 2	AA2	A	77	84	Right-handed alpha
Helix 3	AA3	A	114	118	Right-handed 310
Helix 4	AA4	A	121	127	Right-handed 310
Helix 5	AA5	A	155	175	Right-handed alpha
Helix 6	AA6	A	194	212	Right-handed alpha
Helix 7	AA7	A	254	267	Right-handed alpha
Helix 8	AA8	A	276	281	Right-handed alpha
Helix 9	AA9	A	282	284	Right-handed 310
Helix 10	AB1	A	296	310	Right-handed alpha
Helix 11	AB2	A	363	383	Right-handed alpha
Helix 12	AB3	A	394	404	Right-handed alpha
Helix 13	AB4	A	477	487	Right-handed alpha
Helix 14	AB5	A	499	507	Right-handed alpha
Helix 15	AB6	A	515	527	Right-handed alpha
Helix 16	AB7	B	27	44	Right-handed alpha
Helix 17	AB8	B	78	83	Right-handed alpha
Helix 18	AB9	B	98	102	Right-handed 310
Helix 19	AC1	B	114	118	Right-handed 310
Helix 20	AC2	B	134	138	Right-handed 310
Helix 21	AC3	B	154	165	Right-handed alpha
Helix 22	AC4	B	166	168	Right-handed 310
Helix 23	AC5	B	202	207	Right-handed alpha
Helix 24	AC6	B	256	264	Right-handed alpha
Helix 25	AC7	B	279	283	Right-handed 310
Helix 26	AC8	B	363	383	Right-handed alpha
Helix 27	AC9	B	394	406	Right-handed alpha

There are 11 sheets in PDB entry 8VBC. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	47	49	first strand
Strand 2	A	143	146	anti-parallel
Strand 3	A	129	131	anti-parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	60	64	first strand
Strand 2	A	71	75	anti-parallel

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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	179	183	first strand
Strand 2	A	186	191	anti-parallel
Strand 3	A	105	110	anti-parallel
Strand 4	A	221	222	anti-parallel

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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	227	229	first strand
Strand 2	A	232	234	anti-parallel
Strand 3	A	238	241	anti-parallel
Strand 4	A	316	317	anti-parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	252	253	first strand
Strand 2	A	292	293	anti-parallel

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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	347	354	first strand
Strand 2	A	336	344	anti-parallel
Strand 3	A	326	333	anti-parallel
Strand 4	A	388	389	parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	361	362	first strand
Strand 2	A	512	513	anti-parallel

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There are 5 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	464	469	first strand
Strand 2	A	453	459	anti-parallel
Strand 3	A	438	446	anti-parallel
Strand 4	A	492	497	parallel
Strand 5	A	530	535	parallel

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There are 3 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	47	49	first strand
Strand 2	B	142	146	anti-parallel
Strand 3	B	129	132	anti-parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	60	64	first strand
Strand 2	B	71	75	anti-parallel

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There are 5 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	347	355	first strand
Strand 2	B	336	344	anti-parallel
Strand 3	B	326	331	anti-parallel
Strand 4	B	388	391	parallel
Strand 5	B	413	416	parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8VBC

Analysis of interatomic Contacts of Structural Units in PDB entry:
8VBC