Analysis of interatomic Contacts of Structural Units in PDB entry:
8VBN

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8VBN entry

There are 4 chains in PDB entry 8VBN (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
L	GLN 1	SER 212
H	VAL 2	CYS 262
B	LYS 1	LYS 260
A	GLN 1	GLU 210

There are 18 helices in PDB entry 8VBN. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	L	27	31	Right-handed 310
Helix 2	AA2	L	79	83	Right-handed 310
Helix 3	AA3	L	121	127	Right-handed alpha
Helix 4	AA4	L	181	187	Right-handed alpha
Helix 5	AA5	H	28	32	Right-handed 310
Helix 6	AA6	H	83	87	Right-handed 310
Helix 7	AA7	H	202	204	Right-handed 310
Helix 8	AA8	H	233	237	Right-handed 310
Helix 9	AA9	H	247	250	Right-handed 310
Helix 10	AB1	B	73	75	Right-handed 310
Helix 11	AB2	B	83	87	Right-handed 310
Helix 12	AB3	B	202	204	Right-handed 310
Helix 13	AB4	B	233	237	Right-handed 310
Helix 14	AB5	B	247	250	Right-handed 310
Helix 15	AB6	A	27	31	Right-handed 310
Helix 16	AB7	A	79	83	Right-handed 310
Helix 17	AB8	A	121	127	Right-handed alpha
Helix 18	AB9	A	181	188	Right-handed alpha

There are 25 sheets in PDB entry 8VBN. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	3	4	first strand
Strand 2	L	96	99	parallel
Strand 3	L	84	91	anti-parallel
Strand 4	L	102	106	anti-parallel
Strand 5	L	9	14	parallel

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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	3	4	first strand
Strand 2	L	96	99	parallel
Strand 3	L	84	91	anti-parallel
Strand 4	L	34	38	anti-parallel
Strand 5	L	45	49	anti-parallel
Strand 6	L	53	54	anti-parallel

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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	19	24	first strand
Strand 2	L	70	75	anti-parallel
Strand 3	L	62	67	anti-parallel

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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	114	118	first strand
Strand 2	L	130	139	anti-parallel
Strand 3	L	172	180	anti-parallel
Strand 4	L	159	161	anti-parallel

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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	114	118	first strand
Strand 2	L	130	139	anti-parallel
Strand 3	L	172	180	anti-parallel
Strand 4	L	165	166	anti-parallel

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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	153	155	first strand
Strand 2	L	145	150	anti-parallel
Strand 3	L	191	197	anti-parallel
Strand 4	L	200	206	anti-parallel

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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	3	7	first strand
Strand 2	H	18	25	anti-parallel
Strand 3	H	77	82	anti-parallel
Strand 4	H	67	72	anti-parallel

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There are 5 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	11	12	first strand
Strand 2	H	153	157	parallel
Strand 3	H	88	99	anti-parallel
Strand 4	H	33	39	anti-parallel
Strand 5	H	45	50	anti-parallel

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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	11	12	first strand
Strand 2	H	153	157	parallel
Strand 3	H	88	99	anti-parallel
Strand 4	H	142	149	anti-parallel

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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	166	170	first strand
Strand 2	H	181	191	anti-parallel
Strand 3	H	222	231	anti-parallel
Strand 4	H	209	211	anti-parallel

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There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	166	170	first strand
Strand 2	H	181	191	anti-parallel
Strand 3	H	222	231	anti-parallel
Strand 4	H	215	216	anti-parallel

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There are 3 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	197	200	first strand
Strand 2	H	241	246	anti-parallel
Strand 3	H	251	256	anti-parallel

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There are 4 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	3	7	first strand
Strand 2	B	18	25	anti-parallel
Strand 3	B	77	82	anti-parallel
Strand 4	B	67	72	anti-parallel

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There are 5 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	11	12	first strand
Strand 2	B	153	157	parallel
Strand 3	B	88	102	anti-parallel
Strand 4	B	33	39	anti-parallel
Strand 5	B	45	51	anti-parallel

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There are 4 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	11	12	first strand
Strand 2	B	153	157	parallel
Strand 3	B	88	102	anti-parallel
Strand 4	B	139	149	anti-parallel

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There are 3 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	108	109	first strand
Strand 2	B	123	124	anti-parallel
Strand 3	B	135	136	anti-parallel

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There are 4 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	166	170	first strand
Strand 2	B	181	191	anti-parallel
Strand 3	B	222	231	anti-parallel
Strand 4	B	209	211	anti-parallel

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There are 4 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	166	170	first strand
Strand 2	B	181	191	anti-parallel
Strand 3	B	222	231	anti-parallel
Strand 4	B	215	216	anti-parallel

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There are 3 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	197	200	first strand
Strand 2	B	241	246	anti-parallel
Strand 3	B	251	256	anti-parallel

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There are 6 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	9	14	first strand
Strand 2	A	102	106	parallel
Strand 3	A	85	91	anti-parallel
Strand 4	A	34	38	anti-parallel
Strand 5	A	45	49	anti-parallel
Strand 6	A	53	54	anti-parallel

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There are 4 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	9	14	first strand
Strand 2	A	102	106	parallel
Strand 3	A	85	91	anti-parallel
Strand 4	A	96	98	anti-parallel

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There are 3 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	19	24	first strand
Strand 2	A	70	75	anti-parallel
Strand 3	A	62	67	anti-parallel

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There are 4 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	114	118	first strand
Strand 2	A	130	139	anti-parallel
Strand 3	A	172	180	anti-parallel
Strand 4	A	159	161	anti-parallel

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There are 4 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	114	118	first strand
Strand 2	A	130	139	anti-parallel
Strand 3	A	172	180	anti-parallel
Strand 4	A	165	166	anti-parallel

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There are 4 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	153	155	first strand
Strand 2	A	145	150	anti-parallel
Strand 3	A	191	197	anti-parallel
Strand 4	A	200	206	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8VBN

Analysis of interatomic Contacts of Structural Units in PDB entry:
8VBN