Analysis of interatomic Contacts of Structural Units in PDB entry:
8VBS


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8VBS entry

There are 8 chains in PDB entry 8VBS (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ILE 2HIS 225
A
 LEU 227HIS 363
A
 ALA 365LEU 405
C
 LEU 3SER 138
B
 ILE 2HIS 225
B
 LEU 227HIS 363
B
 ALA 365LEU 405
D
 LEU 3LEU 137
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 53 helices in PDB entry 8VBS. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
4 11Right-handed alpha
Helix 2
AA2
A
12 16Right-handed 310
Helix 3
AA3
A
36 50Right-handed alpha
Helix 4
AA4
A
59 81Right-handed alpha
Helix 5
AA5
A
84 86Right-handed 310
Helix 6
AA6
A
93 105Right-handed alpha
Helix 7
AA7
A
105 110Right-handed alpha
Helix 8
AA8
A
123 126Right-handed 310
Helix 9
AA9
A
127 138Right-handed alpha
Helix 10
AB1
A
153 157Right-handed 310
Helix 11
AB2
A
182 192Right-handed alpha
Helix 12
AB3
A
211 216Right-handed alpha
Helix 13
AB4
A
239 244Right-handed alpha
Helix 14
AB5
A
270 275Right-handed 310
Helix 15
AB6
A
280 298Right-handed alpha
Helix 16
AB7
A
298 318Right-handed alpha
Helix 17
AB8
A
343 354Right-handed alpha
Helix 18
AB9
A
365 372Right-handed alpha
Helix 19
AC1
A
387 405Right-handed alpha
Helix 20
AC2
C
6 16Right-handed alpha
Helix 21
AC3
C
20 33Right-handed alpha
Helix 22
AC4
C
43 45Right-handed 310
Helix 23
AC5
C
75 89Right-handed alpha
Helix 24
AC6
C
93 100Right-handed alpha
Helix 25
AC7
C
102 110Right-handed alpha
Helix 26
AC8
C
121 138Right-handed alpha
Helix 27
AC9
B
4 10Right-handed alpha
Helix 28
AD1
B
11 12Right-handed 310
Helix 29
AD2
B
13 16Right-handed 310
Helix 30
AD3
B
36 49Right-handed alpha
Helix 31
AD4
B
59 81Right-handed alpha
Helix 32
AD5
B
84 86Right-handed 310
Helix 33
AD6
B
93 108Right-handed alpha
Helix 34
AD7
B
123 126Right-handed 310
Helix 35
AD8
B
127 138Right-handed alpha
Helix 36
AD9
B
153 160Right-handed 310
Helix 37
AE1
B
182 192Right-handed alpha
Helix 38
AE2
B
211 216Right-handed alpha
Helix 39
AE3
B
239 244Right-handed alpha
Helix 40
AE4
B
270 275Right-handed 310
Helix 41
AE5
B
280 298Right-handed alpha
Helix 42
AE6
B
298 317Right-handed alpha
Helix 43
AE7
B
318 320Right-handed 310
Helix 44
AE8
B
343 354Right-handed alpha
Helix 45
AE9
B
365 373Right-handed alpha
Helix 46
AF1
B
387 405Right-handed alpha
Helix 47
AF2
D
6 16Right-handed alpha
Helix 48
AF3
D
19 34Right-handed alpha
Helix 49
AF4
D
43 45Right-handed 310
Helix 50
AF5
D
75 89Right-handed alpha
Helix 51
AF6
D
93 99Right-handed alpha
Helix 52
AF7
D
102 110Right-handed alpha
Helix 53
AF8
D
121 137Right-handed alpha
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There are 11 sheets in PDB entry 8VBS. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
18 19first strand
Strand 2
A
22 23anti-parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
25 26first strand
Strand 2
A
356 357parallel
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There are 7 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
88 91first strand
Strand 2
A
234 238anti-parallel
Strand 3
A
219 223anti-parallel
Strand 4
A
196 200parallel
Strand 5
A
165 171parallel
Strand 6
A
115 119parallel
Strand 7
A
140 144parallel
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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
323 326first strand
Strand 2
A
334 339anti-parallel
Strand 3
A
377 381anti-parallel
Strand 4
A
359 361anti-parallel
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There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
47 48first strand
Strand 2
C
55 61anti-parallel
Strand 3
C
67 73anti-parallel
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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
18 19first strand
Strand 2
B
22 23anti-parallel
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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
25 26first strand
Strand 2
B
356 357parallel
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There are 7 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
88 91first strand
Strand 2
B
234 238anti-parallel
Strand 3
B
219 223anti-parallel
Strand 4
B
196 200parallel
Strand 5
B
165 171parallel
Strand 6
B
115 119parallel
Strand 7
B
140 144parallel
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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
256 259first strand
Strand 2
B
265 267anti-parallel
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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
323 326first strand
Strand 2
B
334 339anti-parallel
Strand 3
B
377 381anti-parallel
Strand 4
B
359 361anti-parallel
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There are 3 strands in AB2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
47 48first strand
Strand 2
D
55 61anti-parallel
Strand 3
D
67 73anti-parallel
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