Analysis of interatomic Contacts of Structural Units in PDB entry:
8VBZ


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8VBZ entry

There is 1 chain in PDB entry 8VBZ (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ALA 236THR 573
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 14 helices in PDB entry 8VBZ. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
240 258Right-handed alpha
Helix 2
AA2
A
299 304Right-handed alpha
Helix 3
AA3
A
308 312Right-handed 310
Helix 4
AA4
A
313 323Right-handed alpha
Helix 5
AA5
A
355 361Right-handed alpha
Helix 6
AA6
A
363 372Right-handed alpha
Helix 7
AA7
A
375 386Right-handed alpha
Helix 8
AA8
A
406 410Right-handed 310
Helix 9
AA9
A
411 420Right-handed alpha
Helix 10
AB1
A
427 440Right-handed alpha
Helix 11
AB2
A
463 476Right-handed alpha
Helix 12
AB3
A
477 479Right-handed 310
Helix 13
AB4
A
484 488Right-handed 310
Helix 14
AB5
A
545 564Right-handed alpha
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There are 4 sheets in PDB entry 8VBZ. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
275 280first strand
Strand 2
A
262 269anti-parallel
Strand 3
A
529 536anti-parallel
Strand 4
A
509 522anti-parallel
Strand 5
A
495 506anti-parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
331 333first strand
Strand 2
A
352 354anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
337 339first strand
Strand 2
A
342 344anti-parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
443 444first strand
Strand 2
A
459 460anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il