Analysis of interatomic Contacts of Structural Units in PDB entry:
8VC5


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8VC5 entry

There are 2 chains in PDB entry 8VC5 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 1PRO 493
B
 THR 2PRO 493
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 57 helices in PDB entry 8VC5. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
17 34Right-handed alpha
Helix 2
AA2
A
51 66Right-handed alpha
Helix 3
AA3
A
83 86Right-handed 310
Helix 4
AA4
A
87 101Right-handed alpha
Helix 5
AA5
A
110 123Right-handed alpha
Helix 6
AA6
A
132 137Right-handed 310
Helix 7
AA7
A
138 148Right-handed alpha
Helix 8
AA8
A
179 181Right-handed 310
Helix 9
AA9
A
194 206Right-handed alpha
Helix 10
AB1
A
216 218Right-handed 310
Helix 11
AB2
A
220 232Right-handed alpha
Helix 12
AB3
A
260 267Right-handed alpha
Helix 13
AB4
A
270 283Right-handed alpha
Helix 14
AB5
A
293 300Right-handed alpha
Helix 15
AB6
A
302 306Right-handed 310
Helix 16
AB7
A
314 328Right-handed alpha
Helix 17
AB8
A
330 342Right-handed alpha
Helix 18
AB9
A
344 356Right-handed alpha
Helix 19
AC1
A
361 363Right-handed 310
Helix 20
AC2
A
364 370Right-handed alpha
Helix 21
AC3
A
371 373Right-handed 310
Helix 22
AC4
A
380 385Right-handed 310
Helix 23
AC5
A
390 408Right-handed alpha
Helix 24
AC6
A
412 427Right-handed alpha
Helix 25
AC7
A
430 444Right-handed alpha
Helix 26
AC8
A
450 459Right-handed alpha
Helix 27
AC9
A
459 474Right-handed alpha
Helix 28
AD1
A
478 491Right-handed alpha
Helix 29
AD2
B
17 34Right-handed alpha
Helix 30
AD3
B
51 66Right-handed alpha
Helix 31
AD4
B
83 88Right-handed 310
Helix 32
AD5
B
89 101Right-handed alpha
Helix 33
AD6
B
110 123Right-handed alpha
Helix 34
AD7
B
133 137Right-handed 310
Helix 35
AD8
B
138 149Right-handed alpha
Helix 36
AD9
B
179 181Right-handed 310
Helix 37
AE1
B
194 206Right-handed alpha
Helix 38
AE2
B
216 219Right-handed 310
Helix 39
AE3
B
220 232Right-handed alpha
Helix 40
AE4
B
260 267Right-handed alpha
Helix 41
AE5
B
270 283Right-handed alpha
Helix 42
AE6
B
293 300Right-handed alpha
Helix 43
AE7
B
302 306Right-handed 310
Helix 44
AE8
B
314 328Right-handed alpha
Helix 45
AE9
B
330 342Right-handed alpha
Helix 46
AF1
B
344 356Right-handed alpha
Helix 47
AF2
B
361 363Right-handed 310
Helix 48
AF3
B
364 370Right-handed alpha
Helix 49
AF4
B
371 373Right-handed 310
Helix 50
AF5
B
380 385Right-handed 310
Helix 51
AF6
B
390 407Right-handed alpha
Helix 52
AF7
B
412 427Right-handed alpha
Helix 53
AF8
B
430 433Right-handed 310
Helix 54
AF9
B
434 444Right-handed alpha
Helix 55
AG1
B
450 459Right-handed alpha
Helix 56
AG2
B
459 474Right-handed alpha
Helix 57
AG3
B
478 491Right-handed alpha
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There are 8 sheets in PDB entry 8VC5. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
5 8first strand
Strand 2
A
37 40parallel
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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
104 107first strand
Strand 2
A
153 156anti-parallel
Strand 3
A
185 187anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
163 168first strand
Strand 2
A
172 177anti-parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
210 214first strand
Strand 2
A
237 241parallel
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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
5 8first strand
Strand 2
B
37 40parallel
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There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
104 107first strand
Strand 2
B
153 156anti-parallel
Strand 3
B
185 187anti-parallel
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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
163 168first strand
Strand 2
B
172 177anti-parallel
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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
210 214first strand
Strand 2
B
237 241parallel
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