Analysis of interatomic Contacts of Structural Units in PDB entry:
8VC7

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8VC7 entry

There are 6 chains in PDB entry 8VC7 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
D	ASP 2	CYS 215
J	VAL 5	PRO 225
C	GLN 1	SER 215
A	ASP 2	CYS 215
B	GLU 4	PRO 225
E	GLN 1	SER 215

There are 26 helices in PDB entry 8VC7. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	D	80	84	Right-handed 310
Helix 2	AA2	D	122	128	Right-handed alpha
Helix 3	AA3	D	184	189	Right-handed alpha
Helix 4	AA4	J	31	33	Right-handed 310
Helix 5	AA5	J	90	94	Right-handed 310
Helix 6	AA6	J	168	170	Right-handed 310
Helix 7	AA7	J	199	202	Right-handed 310
Helix 8	AA8	J	213	216	Right-handed 310
Helix 9	AA9	C	57	60	Right-handed 310
Helix 10	AB1	C	61	65	Right-handed 310
Helix 11	AB2	C	74	77	Right-handed 310
Helix 12	AB3	C	88	92	Right-handed 310
Helix 13	AB4	C	209	213	Right-handed 310
Helix 14	AB5	A	80	84	Right-handed 310
Helix 15	AB6	A	122	127	Right-handed alpha
Helix 16	AB7	A	184	189	Right-handed alpha
Helix 17	AB8	B	31	33	Right-handed 310
Helix 18	AB9	B	90	94	Right-handed 310
Helix 19	AC1	B	168	170	Right-handed 310
Helix 20	AC2	B	199	202	Right-handed 310
Helix 21	AC3	B	213	216	Right-handed 310
Helix 22	AC4	E	57	60	Right-handed 310
Helix 23	AC5	E	61	65	Right-handed 310
Helix 24	AC6	E	75	77	Right-handed 310
Helix 25	AC7	E	88	92	Right-handed 310
Helix 26	AC8	E	209	213	Right-handed 310

There are 30 sheets in PDB entry 8VC7. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1, AD2, AD3,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	5	8	first strand
Strand 2	D	20	26	anti-parallel
Strand 3	D	71	76	anti-parallel
Strand 4	D	63	68	anti-parallel

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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	11	14	first strand
Strand 2	D	103	107	parallel
Strand 3	D	86	91	anti-parallel
Strand 4	D	34	39	anti-parallel
Strand 5	D	46	50	anti-parallel
Strand 6	D	54	55	anti-parallel

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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	11	14	first strand
Strand 2	D	103	107	parallel
Strand 3	D	86	91	anti-parallel
Strand 4	D	98	99	anti-parallel

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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	115	119	first strand
Strand 2	D	130	140	anti-parallel
Strand 3	D	174	183	anti-parallel
Strand 4	D	160	164	anti-parallel

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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	154	155	first strand
Strand 2	D	145	151	anti-parallel
Strand 3	D	192	199	anti-parallel
Strand 4	D	206	211	anti-parallel

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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	6	10	first strand
Strand 2	J	21	28	anti-parallel
Strand 3	J	81	86	anti-parallel
Strand 4	J	71	76	anti-parallel

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There are 6 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	14	15	first strand
Strand 2	J	119	123	parallel
Strand 3	J	95	103	anti-parallel
Strand 4	J	35	42	anti-parallel
Strand 5	J	48	54	anti-parallel
Strand 6	J	61	63	anti-parallel

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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	14	15	first strand
Strand 2	J	119	123	parallel
Strand 3	J	95	103	anti-parallel
Strand 4	J	114	115	anti-parallel

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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	132	136	first strand
Strand 2	J	147	157	anti-parallel
Strand 3	J	188	197	anti-parallel
Strand 4	J	175	177	anti-parallel

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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	132	136	first strand
Strand 2	J	147	157	anti-parallel
Strand 3	J	188	197	anti-parallel
Strand 4	J	181	182	anti-parallel

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There are 3 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	163	166	first strand
Strand 2	J	207	212	anti-parallel
Strand 3	J	217	222	anti-parallel

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There are 4 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	4	5	first strand
Strand 2	C	19	25	anti-parallel
Strand 3	C	79	84	anti-parallel
Strand 4	C	68	71	anti-parallel

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There are 6 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	11	14	first strand
Strand 2	C	104	115	parallel
Strand 3	C	93	101	anti-parallel
Strand 4	C	35	39	anti-parallel
Strand 5	C	48	51	anti-parallel
Strand 6	C	54	55	anti-parallel

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There are 4 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	122	129	first strand
Strand 2	C	132	142	anti-parallel
Strand 3	C	173	181	anti-parallel
Strand 4	C	162	167	anti-parallel

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There are 4 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	157	158	first strand
Strand 2	C	147	151	anti-parallel
Strand 3	C	188	195	anti-parallel
Strand 4	C	200	207	anti-parallel

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There are 4 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	5	8	first strand
Strand 2	A	20	26	anti-parallel
Strand 3	A	71	76	anti-parallel
Strand 4	A	63	68	anti-parallel

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There are 6 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	11	14	first strand
Strand 2	A	103	107	parallel
Strand 3	A	86	91	anti-parallel
Strand 4	A	34	39	anti-parallel
Strand 5	A	46	50	anti-parallel
Strand 6	A	54	55	anti-parallel

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There are 4 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	11	14	first strand
Strand 2	A	103	107	parallel
Strand 3	A	86	91	anti-parallel
Strand 4	A	98	99	anti-parallel

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There are 4 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	115	119	first strand
Strand 2	A	130	140	anti-parallel
Strand 3	A	174	183	anti-parallel
Strand 4	A	160	164	anti-parallel

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There are 3 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	145	151	first strand
Strand 2	A	192	199	anti-parallel
Strand 3	A	206	211	anti-parallel

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There are 4 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	6	10	first strand
Strand 2	B	21	28	anti-parallel
Strand 3	B	81	86	anti-parallel
Strand 4	B	71	76	anti-parallel

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There are 6 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	14	15	first strand
Strand 2	B	119	123	parallel
Strand 3	B	95	103	anti-parallel
Strand 4	B	35	42	anti-parallel
Strand 5	B	49	54	anti-parallel
Strand 6	B	61	63	anti-parallel

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There are 4 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	14	15	first strand
Strand 2	B	119	123	parallel
Strand 3	B	95	103	anti-parallel
Strand 4	B	114	115	anti-parallel

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There are 4 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	132	136	first strand
Strand 2	B	147	157	anti-parallel
Strand 3	B	188	197	anti-parallel
Strand 4	B	175	177	anti-parallel

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There are 4 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	132	136	first strand
Strand 2	B	147	157	anti-parallel
Strand 3	B	188	197	anti-parallel
Strand 4	B	181	182	anti-parallel

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There are 3 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	163	166	first strand
Strand 2	B	206	212	anti-parallel
Strand 3	B	217	223	anti-parallel

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There are 4 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	4	5	first strand
Strand 2	E	19	25	anti-parallel
Strand 3	E	79	84	anti-parallel
Strand 4	E	68	74	anti-parallel

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There are 6 strands in AD1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	11	14	first strand
Strand 2	E	104	115	parallel
Strand 3	E	93	101	anti-parallel
Strand 4	E	35	39	anti-parallel
Strand 5	E	48	51	anti-parallel
Strand 6	E	54	55	anti-parallel

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There are 4 strands in AD2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	122	129	first strand
Strand 2	E	132	142	anti-parallel
Strand 3	E	173	181	anti-parallel
Strand 4	E	162	167	anti-parallel

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There are 4 strands in AD3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	157	158	first strand
Strand 2	E	147	151	anti-parallel
Strand 3	E	188	195	anti-parallel
Strand 4	E	200	207	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8VC7

Analysis of interatomic Contacts of Structural Units in PDB entry:
8VC7