Analysis of interatomic Contacts of Structural Units in PDB entry:
8VC9

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8VC9 entry

There are 4 chains in PDB entry 8VC9 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	ASN 2	SER 380
B	MET 1	PRO 379
C	MET 1	ASP 378
D	MET 1	ARG 136

There are 68 helices in PDB entry 8VC9. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	12	26	Right-handed alpha
Helix 2	AA2	A	37	49	Right-handed alpha
Helix 3	AA3	A	64	75	Right-handed alpha
Helix 4	AA4	A	88	98	Right-handed alpha
Helix 5	AA5	A	107	110	Right-handed 310
Helix 6	AA6	A	111	180	Right-handed alpha
Helix 7	AA7	A	183	214	Right-handed alpha
Helix 8	AA8	A	224	243	Right-handed alpha
Helix 9	AA9	A	260	283	Right-handed alpha
Helix 10	AB1	A	319	324	Right-handed alpha
Helix 11	AB2	A	342	354	Right-handed alpha
Helix 12	AB3	B	12	26	Right-handed alpha
Helix 13	AB4	B	37	49	Right-handed alpha
Helix 14	AB5	B	64	75	Right-handed alpha
Helix 15	AB6	B	88	98	Right-handed alpha
Helix 16	AB7	B	107	110	Right-handed 310
Helix 17	AB8	B	111	179	Right-handed alpha
Helix 18	AB9	B	183	213	Right-handed alpha
Helix 19	AC1	B	224	242	Right-handed alpha
Helix 20	AC2	B	260	283	Right-handed alpha
Helix 21	AC3	B	319	324	Right-handed alpha
Helix 22	AC4	B	342	354	Right-handed alpha
Helix 23	AC5	C	12	26	Right-handed alpha
Helix 24	AC6	C	37	49	Right-handed alpha
Helix 25	AC7	C	64	75	Right-handed alpha
Helix 26	AC8	C	88	98	Right-handed alpha
Helix 27	AC9	C	107	110	Right-handed 310
Helix 28	AD1	C	111	180	Right-handed alpha
Helix 29	AD2	C	183	213	Right-handed alpha
Helix 30	AD3	C	224	243	Right-handed alpha
Helix 31	AD4	C	260	283	Right-handed alpha
Helix 32	AD5	C	319	324	Right-handed alpha
Helix 33	AD6	C	342	354	Right-handed alpha
Helix 34	AD7	D	12	25	Right-handed alpha
Helix 35	AD8	D	26	28	Right-handed 310
Helix 36	AD9	D	37	49	Right-handed alpha
Helix 37	AE1	D	64	75	Right-handed alpha
Helix 38	AE2	D	88	98	Right-handed alpha
Helix 39	AE3	D	107	110	Right-handed 310
Helix 40	AE4	D	111	179	Right-handed alpha
Helix 41	AE5	D	183	213	Right-handed alpha
Helix 42	AE6	D	224	242	Right-handed alpha
Helix 43	AE7	D	260	283	Right-handed alpha
Helix 44	AE8	D	319	324	Right-handed alpha
Helix 45	AE9	D	342	354	Right-handed alpha
Helix 46	AF1	E	12	26	Right-handed alpha
Helix 47	AF2	E	37	49	Right-handed alpha
Helix 48	AF3	E	64	75	Right-handed alpha
Helix 49	AF4	E	88	98	Right-handed alpha
Helix 50	AF5	E	107	110	Right-handed 310
Helix 51	AF6	E	111	179	Right-handed alpha
Helix 52	AF7	E	183	213	Right-handed alpha
Helix 53	AF8	E	224	235	Right-handed alpha
Helix 54	AF9	E	236	242	Right-handed alpha
Helix 55	AG1	E	260	283	Right-handed alpha
Helix 56	AG2	E	319	324	Right-handed alpha
Helix 57	AG3	E	342	354	Right-handed alpha
Helix 58	AG4	F	12	26	Right-handed alpha
Helix 59	AG5	F	37	49	Right-handed alpha
Helix 60	AG6	F	64	75	Right-handed alpha
Helix 61	AG7	F	88	98	Right-handed alpha
Helix 62	AG8	F	108	110	Right-handed 310
Helix 63	AG9	F	111	180	Right-handed alpha
Helix 64	AH1	F	183	213	Right-handed alpha
Helix 65	AH2	F	224	242	Right-handed alpha
Helix 66	AH3	F	260	283	Right-handed alpha
Helix 67	AH4	F	319	324	Right-handed alpha
Helix 68	AH5	F	342	354	Right-handed alpha

There are 24 sheets in PDB entry 8VC9. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	30	35	first strand
Strand 2	A	4	9	parallel
Strand 3	A	52	55	parallel
Strand 4	A	80	84	parallel
Strand 5	A	102	105	parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	58	59	first strand
Strand 2	A	62	63	anti-parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	220	223	first strand
Strand 2	A	256	259	anti-parallel

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There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	245	250	first strand
Strand 2	A	291	301	parallel
Strand 3	A	304	313	anti-parallel
Strand 4	A	367	375	anti-parallel
Strand 5	A	357	363	anti-parallel

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There are 5 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	30	35	first strand
Strand 2	B	4	9	parallel
Strand 3	B	52	55	parallel
Strand 4	B	80	84	parallel
Strand 5	B	102	105	parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	58	59	first strand
Strand 2	B	62	63	anti-parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	220	223	first strand
Strand 2	B	256	259	anti-parallel

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There are 5 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	245	248	first strand
Strand 2	B	291	301	parallel
Strand 3	B	304	313	anti-parallel
Strand 4	B	367	375	anti-parallel
Strand 5	B	357	363	anti-parallel

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There are 5 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	30	35	first strand
Strand 2	C	4	9	parallel
Strand 3	C	52	55	parallel
Strand 4	C	80	84	parallel
Strand 5	C	102	105	parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	58	59	first strand
Strand 2	C	62	63	anti-parallel

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There are 6 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	220	223	first strand
Strand 2	C	256	259	anti-parallel
Strand 3	C	367	377	anti-parallel
Strand 4	C	304	313	anti-parallel
Strand 5	C	291	301	anti-parallel
Strand 6	C	245	248	parallel

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There are 4 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	220	223	first strand
Strand 2	C	256	259	anti-parallel
Strand 3	C	367	377	anti-parallel
Strand 4	C	357	363	anti-parallel

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There are 5 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	30	35	first strand
Strand 2	D	4	9	parallel
Strand 3	D	52	55	parallel
Strand 4	D	80	84	parallel
Strand 5	D	102	105	parallel

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There are 2 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	58	59	first strand
Strand 2	D	62	63	anti-parallel

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There are 2 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	220	223	first strand
Strand 2	D	256	259	anti-parallel

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There are 5 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	245	250	first strand
Strand 2	D	291	301	parallel
Strand 3	D	304	313	anti-parallel
Strand 4	D	367	375	anti-parallel
Strand 5	D	357	363	anti-parallel

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There are 5 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	30	35	first strand
Strand 2	E	4	9	parallel
Strand 3	E	52	55	parallel
Strand 4	E	80	84	parallel
Strand 5	E	102	105	parallel

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There are 2 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	58	59	first strand
Strand 2	E	62	63	anti-parallel

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There are 2 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	220	223	first strand
Strand 2	E	256	259	anti-parallel

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There are 5 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	245	248	first strand
Strand 2	E	291	301	parallel
Strand 3	E	304	313	anti-parallel
Strand 4	E	367	375	anti-parallel
Strand 5	E	357	363	anti-parallel

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There are 5 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	30	35	first strand
Strand 2	F	4	9	parallel
Strand 3	F	52	55	parallel
Strand 4	F	80	84	parallel
Strand 5	F	102	105	parallel

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There are 2 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	58	59	first strand
Strand 2	F	62	63	anti-parallel

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There are 2 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	220	223	first strand
Strand 2	F	256	259	anti-parallel

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There are 5 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	245	248	first strand
Strand 2	F	291	301	parallel
Strand 3	F	304	313	anti-parallel
Strand 4	F	367	375	anti-parallel
Strand 5	F	357	363	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8VC9

Analysis of interatomic Contacts of Structural Units in PDB entry:
8VC9