Analysis of interatomic Contacts of Structural Units in PDB entry:
8VCB


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8VCB entry

There are 2 chains in PDB entry 8VCB (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 PHE 32GLU 343
B
 ASN 34GLU 343
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 23 helices in PDB entry 8VCB. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
35 51Right-handed alpha
Helix 2
AA2
A
60 70Right-handed alpha
Helix 3
AA3
A
77 91Right-handed alpha
Helix 4
AA4
A
109 114Right-handed alpha
Helix 5
AA5
A
120 128Right-handed alpha
Helix 6
AA6
A
164 175Right-handed alpha
Helix 7
AA7
A
176 178Right-handed 310
Helix 8
AA8
A
195 201Right-handed alpha
Helix 9
AA9
A
202 204Right-handed 310
Helix 10
AB1
A
254 264Right-handed alpha
Helix 11
AB2
A
322 327Right-handed alpha
Helix 12
AB3
A
331 343Right-handed alpha
Helix 13
AB4
B
35 51Right-handed alpha
Helix 14
AB5
B
60 70Right-handed alpha
Helix 15
AB6
B
77 91Right-handed alpha
Helix 16
AB7
B
120 128Right-handed alpha
Helix 17
AB8
B
164 175Right-handed alpha
Helix 18
AB9
B
176 178Right-handed 310
Helix 19
AC1
B
195 201Right-handed alpha
Helix 20
AC2
B
202 204Right-handed 310
Helix 21
AC3
B
254 265Right-handed alpha
Helix 22
AC4
B
322 327Right-handed alpha
Helix 23
AC5
B
331 343Right-handed alpha
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There are 6 sheets in PDB entry 8VCB. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
105 106first strand
Strand 2
A
98 100anti-parallel
Strand 3
A
293 296anti-parallel
Strand 4
A
284 287anti-parallel
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There are 7 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
137 139first strand
Strand 2
A
142 146anti-parallel
Strand 3
A
151 156anti-parallel
Strand 4
A
180 184parallel
Strand 5
A
243 248parallel
Strand 6
A
269 273parallel
Strand 7
A
317 318parallel
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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
228 232first strand
Strand 2
A
208 213anti-parallel
Strand 3
A
301 303anti-parallel
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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
105 107first strand
Strand 2
B
98 100anti-parallel
Strand 3
B
293 296anti-parallel
Strand 4
B
284 287anti-parallel
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There are 7 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
137 139first strand
Strand 2
B
142 146anti-parallel
Strand 3
B
152 155anti-parallel
Strand 4
B
181 184parallel
Strand 5
B
244 248parallel
Strand 6
B
269 273parallel
Strand 7
B
317 318parallel
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There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
228 232first strand
Strand 2
B
208 213anti-parallel
Strand 3
B
301 303anti-parallel
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