Analysis of interatomic Contacts of Structural Units in PDB entry:
8VCE


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8VCE entry

There are 2 chains in PDB entry 8VCE (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 PRO 6VAL 326
B
 SER 5VAL 326
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 27 helices in PDB entry 8VCE. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
9 15Right-handed alpha
Helix 2
AA2
A
28 31Right-handed 310
Helix 3
AA3
A
68 70Right-handed 310
Helix 4
AA4
A
98 113Right-handed alpha
Helix 5
AA5
A
130 146Right-handed alpha
Helix 6
AA6
A
148 154Right-handed alpha
Helix 7
AA7
A
166 181Right-handed alpha
Helix 8
AA8
A
182 187Right-handed alpha
Helix 9
AA9
A
207 213Right-handed alpha
Helix 10
AB1
A
220 232Right-handed alpha
Helix 11
AB2
A
253 260Right-handed alpha
Helix 12
AB3
A
274 288Right-handed alpha
Helix 13
AB4
A
303 308Right-handed alpha
Helix 14
AB5
A
311 325Right-handed alpha
Helix 15
AB6
B
9 15Right-handed alpha
Helix 16
AB7
B
68 70Right-handed 310
Helix 17
AB8
B
98 113Right-handed alpha
Helix 18
AB9
B
130 145Right-handed alpha
Helix 19
AC1
B
148 154Right-handed alpha
Helix 20
AC2
B
166 180Right-handed alpha
Helix 21
AC3
B
182 187Right-handed alpha
Helix 22
AC4
B
207 213Right-handed alpha
Helix 23
AC5
B
220 232Right-handed alpha
Helix 24
AC6
B
253 260Right-handed alpha
Helix 25
AC7
B
274 288Right-handed alpha
Helix 26
AC8
B
303 308Right-handed alpha
Helix 27
AC9
B
311 325Right-handed alpha
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There are 4 sheets in PDB entry 8VCE. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
16 18first strand
Strand 2
A
24 26anti-parallel
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There are 8 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
46 54first strand
Strand 2
A
59 66anti-parallel
Strand 3
A
115 119anti-parallel
Strand 4
A
80 86parallel
Strand 5
A
155 165parallel
Strand 6
A
191 197parallel
Strand 7
A
263 269parallel
Strand 8
A
292 297parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
16 18first strand
Strand 2
B
24 26anti-parallel
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There are 8 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
46 54first strand
Strand 2
B
59 66anti-parallel
Strand 3
B
115 119anti-parallel
Strand 4
B
80 86parallel
Strand 5
B
155 165parallel
Strand 6
B
191 197parallel
Strand 7
B
263 269parallel
Strand 8
B
291 297parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il