Analysis of interatomic Contacts of Structural Units in PDB entry:
8VCH


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8VCH entry

There are 4 chains in PDB entry 8VCH (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ARG 138THR 421
B
 ARG 138THR 421
C
 ARG 138THR 421
D
 ARG 138THR 421
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 58 helices in PDB entry 8VCH. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
145 155Right-handed alpha
Helix 2
AA2
A
156 158Right-handed 310
Helix 3
AA3
A
159 184Right-handed alpha
Helix 4
AA4
A
220 244Right-handed alpha
Helix 5
AA5
A
249 252Right-handed 310
Helix 6
AA6
A
253 262Right-handed alpha
Helix 7
AA7
A
263 275Right-handed alpha
Helix 8
AA8
A
290 300Right-handed alpha
Helix 9
AA9
A
301 310Right-handed 310
Helix 10
AB1
A
311 324Right-handed alpha
Helix 11
AB2
A
324 350Right-handed alpha
Helix 12
AB3
A
361 363Right-handed 310
Helix 13
AB4
A
364 373Right-handed alpha
Helix 14
AB5
A
384 403Right-handed alpha
Helix 15
AB6
A
405 419Right-handed alpha
Helix 16
AB7
B
145 155Right-handed alpha
Helix 17
AB8
B
156 158Right-handed 310
Helix 18
AB9
B
159 184Right-handed alpha
Helix 19
AC1
B
220 244Right-handed alpha
Helix 20
AC2
B
253 262Right-handed alpha
Helix 21
AC3
B
263 275Right-handed alpha
Helix 22
AC4
B
290 300Right-handed alpha
Helix 23
AC5
B
301 310Right-handed 310
Helix 24
AC6
B
311 324Right-handed alpha
Helix 25
AC7
B
324 350Right-handed alpha
Helix 26
AC8
B
361 363Right-handed 310
Helix 27
AC9
B
364 373Right-handed alpha
Helix 28
AD1
B
384 403Right-handed alpha
Helix 29
AD2
B
405 419Right-handed alpha
Helix 30
AD3
C
145 155Right-handed alpha
Helix 31
AD4
C
156 158Right-handed 310
Helix 32
AD5
C
159 184Right-handed alpha
Helix 33
AD6
C
220 244Right-handed alpha
Helix 34
AD7
C
249 252Right-handed 310
Helix 35
AD8
C
253 262Right-handed alpha
Helix 36
AD9
C
263 275Right-handed alpha
Helix 37
AE1
C
290 300Right-handed alpha
Helix 38
AE2
C
301 310Right-handed 310
Helix 39
AE3
C
311 324Right-handed alpha
Helix 40
AE4
C
324 350Right-handed alpha
Helix 41
AE5
C
361 363Right-handed 310
Helix 42
AE6
C
364 373Right-handed alpha
Helix 43
AE7
C
384 403Right-handed alpha
Helix 44
AE8
C
405 419Right-handed alpha
Helix 45
AE9
D
145 155Right-handed alpha
Helix 46
AF1
D
156 158Right-handed 310
Helix 47
AF2
D
159 184Right-handed alpha
Helix 48
AF3
D
220 244Right-handed alpha
Helix 49
AF4
D
253 262Right-handed alpha
Helix 50
AF5
D
263 275Right-handed alpha
Helix 51
AF6
D
290 300Right-handed alpha
Helix 52
AF7
D
301 310Right-handed 310
Helix 53
AF8
D
311 324Right-handed alpha
Helix 54
AF9
D
324 350Right-handed alpha
Helix 55
AG1
D
361 363Right-handed 310
Helix 56
AG2
D
364 373Right-handed alpha
Helix 57
AG3
D
384 403Right-handed alpha
Helix 58
AG4
D
405 419Right-handed alpha
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There are no sheets in PDB entry 8VCH
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il