Analysis of interatomic Contacts of Structural Units in PDB entry:
8VCJ

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8VCJ entry

There are 11 chains in PDB entry 8VCJ (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	ALA 3	GLU 485
B	ALA 3	GLU 485
C	ALA 3	VAL 405
Y	MET 1	ALA 309
D	ALA 3	GLU 485
E	THR 4	GLU 485
F	ALA 3	VAL 405
G	GLY 2	VAL 405
X	MET 1	LEU 310
H	A 1	G 50
I	C 1	T 50

There are208 helices in PDB entry 8VCJ. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	21	26	Right-handed alpha
Helix 2	AA2	A	29	36	Right-handed alpha
Helix 3	AA3	A	47	53	Right-handed 310
Helix 4	AA4	A	54	64	Right-handed alpha
Helix 5	AA5	A	73	90	Right-handed alpha
Helix 6	AA6	A	100	115	Right-handed alpha
Helix 7	AA7	A	141	151	Right-handed alpha
Helix 8	AA8	A	179	196	Right-handed alpha
Helix 9	AA9	A	199	204	Right-handed alpha
Helix 10	AB1	A	209	225	Right-handed alpha
Helix 11	AB2	A	245	260	Right-handed alpha
Helix 12	AB3	A	268	270	Right-handed 310
Helix 13	AB4	A	271	280	Right-handed alpha
Helix 14	AB5	A	283	287	Right-handed 310
Helix 15	AB6	A	305	317	Right-handed alpha
Helix 16	AB7	A	329	341	Right-handed alpha
Helix 17	AB8	A	343	362	Right-handed alpha
Helix 18	AB9	A	367	379	Right-handed alpha
Helix 19	AC1	A	382	392	Right-handed alpha
Helix 20	AC2	A	395	400	Right-handed alpha
Helix 21	AC3	A	408	422	Right-handed alpha
Helix 22	AC4	A	426	435	Right-handed alpha
Helix 23	AC5	A	437	447	Right-handed alpha
Helix 24	AC6	A	455	467	Right-handed alpha
Helix 25	AC7	A	471	485	Right-handed alpha
Helix 26	AC8	B	15	19	Right-handed 310
Helix 27	AC9	B	21	26	Right-handed alpha
Helix 28	AD1	B	32	38	Right-handed alpha
Helix 29	AD2	B	39	41	Right-handed 310
Helix 30	AD3	B	54	63	Right-handed alpha
Helix 31	AD4	B	64	69	Right-handed alpha
Helix 32	AD5	B	75	90	Right-handed alpha
Helix 33	AD6	B	91	95	Right-handed 310
Helix 34	AD7	B	100	115	Right-handed alpha
Helix 35	AD8	B	149	153	Right-handed 310
Helix 36	AD9	B	185	196	Right-handed alpha
Helix 37	AE1	B	198	203	Right-handed alpha
Helix 38	AE2	B	209	215	Right-handed alpha
Helix 39	AE3	B	219	224	Right-handed alpha
Helix 40	AE4	B	233	238	Right-handed 310
Helix 41	AE5	B	244	259	Right-handed alpha
Helix 42	AE6	B	271	276	Right-handed alpha
Helix 43	AE7	B	278	286	Right-handed alpha
Helix 44	AE8	B	305	312	Right-handed alpha
Helix 45	AE9	B	329	341	Right-handed alpha
Helix 46	AF1	B	343	362	Right-handed alpha
Helix 47	AF2	B	367	379	Right-handed alpha
Helix 48	AF3	B	382	392	Right-handed alpha
Helix 49	AF4	B	393	400	Right-handed alpha
Helix 50	AF5	B	408	421	Right-handed alpha
Helix 51	AF6	B	426	434	Right-handed alpha
Helix 52	AF7	B	437	447	Right-handed alpha
Helix 53	AF8	B	455	467	Right-handed alpha
Helix 54	AF9	B	471	485	Right-handed alpha
Helix 55	AG1	C	15	19	Right-handed 310
Helix 56	AG2	C	21	26	Right-handed alpha
Helix 57	AG3	C	32	41	Right-handed alpha
Helix 58	AG4	C	47	51	Right-handed 310
Helix 59	AG5	C	54	63	Right-handed alpha
Helix 60	AG6	C	73	89	Right-handed alpha
Helix 61	AG7	C	100	115	Right-handed alpha
Helix 62	AG8	C	143	151	Right-handed alpha
Helix 63	AG9	C	182	194	Right-handed alpha
Helix 64	AH1	C	199	204	Right-handed alpha
Helix 65	AH2	C	209	224	Right-handed alpha
Helix 66	AH3	C	233	238	Right-handed 310
Helix 67	AH4	C	244	258	Right-handed alpha
Helix 68	AH5	C	268	273	Right-handed 310
Helix 69	AH6	C	305	317	Right-handed alpha
Helix 70	AH7	C	329	341	Right-handed alpha
Helix 71	AH8	C	343	362	Right-handed alpha
Helix 72	AH9	C	367	379	Right-handed alpha
Helix 73	AI1	C	382	392	Right-handed alpha
Helix 74	AI2	C	393	399	Right-handed alpha
Helix 75	AI3	Y	12	24	Right-handed alpha
Helix 76	AI4	Y	28	37	Right-handed alpha
Helix 77	AI5	Y	51	59	Right-handed alpha
Helix 78	AI6	Y	66	74	Right-handed alpha
Helix 79	AI7	Y	76	84	Right-handed 310
Helix 80	AI8	Y	85	98	Right-handed alpha
Helix 81	AI9	Y	101	109	Right-handed alpha
Helix 82	AJ1	Y	109	114	Right-handed alpha
Helix 83	AJ2	Y	124	135	Right-handed alpha
Helix 84	AJ3	Y	166	168	Right-handed 310
Helix 85	AJ4	Y	189	200	Right-handed alpha
Helix 86	AJ5	Y	201	203	Right-handed 310
Helix 87	AJ6	Y	205	210	Right-handed 310
Helix 88	AJ7	Y	214	230	Right-handed alpha
Helix 89	AJ8	Y	240	250	Right-handed alpha
Helix 90	AJ9	Y	251	258	Right-handed alpha
Helix 91	AK1	Y	269	274	Right-handed alpha
Helix 92	AK2	Y	283	295	Right-handed alpha
Helix 93	AK3	Y	299	309	Right-handed alpha
Helix 94	AK4	D	29	35	Right-handed alpha
Helix 95	AK5	D	37	41	Right-handed 310
Helix 96	AK6	D	47	53	Right-handed alpha
Helix 97	AK7	D	54	64	Right-handed alpha
Helix 98	AK8	D	73	90	Right-handed alpha
Helix 99	AK9	D	100	114	Right-handed alpha
Helix 100	AL1	D	142	150	Right-handed alpha
Helix 101	AL2	D	179	196	Right-handed alpha
Helix 102	AL3	D	198	204	Right-handed alpha
Helix 103	AL4	D	209	224	Right-handed alpha
Helix 104	AL5	D	233	237	Right-handed 310
Helix 105	AL6	D	244	260	Right-handed alpha
Helix 106	AL7	D	268	270	Right-handed 310
Helix 107	AL8	D	271	281	Right-handed alpha
Helix 108	AL9	D	305	317	Right-handed alpha
Helix 109	AM1	D	329	339	Right-handed alpha
Helix 110	AM2	D	343	362	Right-handed alpha
Helix 111	AM3	D	367	378	Right-handed alpha
Helix 112	AM4	D	382	392	Right-handed alpha
Helix 113	AM5	D	393	400	Right-handed alpha
Helix 114	AM6	D	408	421	Right-handed alpha
Helix 115	AM7	D	426	434	Right-handed alpha
Helix 116	AM8	D	440	447	Right-handed alpha
Helix 117	AM9	D	455	467	Right-handed alpha
Helix 118	AN1	D	471	484	Right-handed alpha
Helix 119	AN2	E	15	19	Right-handed 310
Helix 120	AN3	E	21	26	Right-handed alpha
Helix 121	AN4	E	32	39	Right-handed alpha
Helix 122	AN5	E	47	52	Right-handed alpha
Helix 123	AN6	E	54	64	Right-handed alpha
Helix 124	AN7	E	75	90	Right-handed alpha
Helix 125	AN8	E	91	95	Right-handed 310
Helix 126	AN9	E	100	115	Right-handed alpha
Helix 127	AO1	E	143	151	Right-handed alpha
Helix 128	AO2	E	179	195	Right-handed alpha
Helix 129	AO3	E	198	204	Right-handed alpha
Helix 130	AO4	E	209	224	Right-handed alpha
Helix 131	AO5	E	233	237	Right-handed 310
Helix 132	AO6	E	246	259	Right-handed alpha
Helix 133	AO7	E	274	277	Right-handed 310
Helix 134	AO8	E	278	283	Right-handed alpha
Helix 135	AO9	E	305	317	Right-handed alpha
Helix 136	AP1	E	329	341	Right-handed alpha
Helix 137	AP2	E	343	362	Right-handed alpha
Helix 138	AP3	E	367	379	Right-handed alpha
Helix 139	AP4	E	382	392	Right-handed alpha
Helix 140	AP5	E	393	400	Right-handed alpha
Helix 141	AP6	E	407	423	Right-handed alpha
Helix 142	AP7	E	429	435	Right-handed alpha
Helix 143	AP8	E	437	448	Right-handed alpha
Helix 144	AP9	E	452	467	Right-handed alpha
Helix 145	AQ1	E	471	485	Right-handed alpha
Helix 146	AQ2	F	21	26	Right-handed alpha
Helix 147	AQ3	F	32	37	Right-handed alpha
Helix 148	AQ4	F	56	61	Right-handed alpha
Helix 149	AQ5	F	64	69	Right-handed alpha
Helix 150	AQ6	F	75	89	Right-handed alpha
Helix 151	AQ7	F	100	115	Right-handed alpha
Helix 152	AQ8	F	141	150	Right-handed alpha
Helix 153	AQ9	F	151	153	Right-handed 310
Helix 154	AR1	F	184	195	Right-handed alpha
Helix 155	AR2	F	209	217	Right-handed alpha
Helix 156	AR3	F	219	224	Right-handed alpha
Helix 157	AR4	F	233	238	Right-handed 310
Helix 158	AR5	F	248	257	Right-handed alpha
Helix 159	AR6	F	268	270	Right-handed 310
Helix 160	AR7	F	271	276	Right-handed alpha
Helix 161	AR8	F	278	286	Right-handed alpha
Helix 162	AR9	F	305	317	Right-handed alpha
Helix 163	AS1	F	329	341	Right-handed alpha
Helix 164	AS2	F	343	362	Right-handed alpha
Helix 165	AS3	F	367	378	Right-handed alpha
Helix 166	AS4	F	382	392	Right-handed alpha
Helix 167	AS5	F	393	398	Right-handed alpha
Helix 168	AS6	G	21	26	Right-handed alpha
Helix 169	AS7	G	32	37	Right-handed alpha
Helix 170	AS8	G	47	53	Right-handed 310
Helix 171	AS9	G	54	63	Right-handed alpha
Helix 172	AT1	G	64	69	Right-handed alpha
Helix 173	AT2	G	73	89	Right-handed alpha
Helix 174	AT3	G	101	115	Right-handed alpha
Helix 175	AT4	G	143	148	Right-handed alpha
Helix 176	AT5	G	149	153	Right-handed 310
Helix 177	AT6	G	180	194	Right-handed alpha
Helix 178	AT7	G	209	218	Right-handed alpha
Helix 179	AT8	G	219	224	Right-handed alpha
Helix 180	AT9	G	233	240	Right-handed 310
Helix 181	AU1	G	243	258	Right-handed alpha
Helix 182	AU2	G	268	270	Right-handed 310
Helix 183	AU3	G	271	278	Right-handed alpha
Helix 184	AU4	G	305	317	Right-handed alpha
Helix 185	AU5	G	329	341	Right-handed alpha
Helix 186	AU6	G	343	362	Right-handed alpha
Helix 187	AU7	G	367	379	Right-handed alpha
Helix 188	AU8	G	382	392	Right-handed alpha
Helix 189	AU9	G	393	398	Right-handed alpha
Helix 190	AV1	X	12	20	Right-handed alpha
Helix 191	AV2	X	28	37	Right-handed alpha
Helix 192	AV3	X	53	59	Right-handed alpha
Helix 193	AV4	X	66	74	Right-handed alpha
Helix 194	AV5	X	76	85	Right-handed alpha
Helix 195	AV6	X	85	96	Right-handed alpha
Helix 196	AV7	X	100	108	Right-handed alpha
Helix 197	AV8	X	124	135	Right-handed alpha
Helix 198	AV9	X	166	168	Right-handed 310
Helix 199	AW1	X	176	181	Right-handed alpha
Helix 200	AW2	X	189	200	Right-handed alpha
Helix 201	AW3	X	201	203	Right-handed 310
Helix 202	AW4	X	206	211	Right-handed alpha
Helix 203	AW5	X	214	230	Right-handed alpha
Helix 204	AW6	X	240	250	Right-handed alpha
Helix 205	AW7	X	251	258	Right-handed alpha
Helix 206	AW8	X	269	276	Right-handed alpha
Helix 207	AW9	X	283	295	Right-handed alpha
Helix 208	AX1	X	299	310	Right-handed alpha

There are 20 sheets in PDB entry 8VCJ. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	170	173	first strand
Strand 2	A	229	232	parallel
Strand 3	A	263	267	parallel
Strand 4	A	132	136	parallel
Strand 5	A	289	293	parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	156	158	first strand
Strand 2	A	165	167	anti-parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	299	300	first strand
Strand 2	A	303	304	anti-parallel

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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	6	7	first strand
Strand 2	B	156	158	parallel
Strand 3	B	165	167	anti-parallel

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There are 5 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	170	173	first strand
Strand 2	B	229	232	parallel
Strand 3	B	263	267	parallel
Strand 4	B	131	136	parallel
Strand 5	B	290	293	parallel

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There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	6	7	first strand
Strand 2	C	156	158	parallel
Strand 3	C	165	167	anti-parallel

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There are 5 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	170	173	first strand
Strand 2	C	229	232	parallel
Strand 3	C	263	267	parallel
Strand 4	C	131	136	parallel
Strand 5	C	290	293	parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	Y	120	123	first strand
Strand 2	Y	159	164	anti-parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	Y	232	233	first strand
Strand 2	Y	236	237	anti-parallel

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There are 6 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	156	158	first strand
Strand 2	D	165	173	anti-parallel
Strand 3	D	226	232	parallel
Strand 4	D	263	267	parallel
Strand 5	D	132	136	parallel
Strand 6	D	289	293	parallel

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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	299	300	first strand
Strand 2	D	303	304	anti-parallel

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There are 3 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	6	7	first strand
Strand 2	E	156	158	parallel
Strand 3	E	165	167	anti-parallel

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There are 5 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	171	173	first strand
Strand 2	E	229	232	parallel
Strand 3	E	263	267	parallel
Strand 4	E	131	136	parallel
Strand 5	E	290	293	parallel

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There are 3 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	6	7	first strand
Strand 2	F	156	158	parallel
Strand 3	F	165	167	anti-parallel

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There are 5 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	171	173	first strand
Strand 2	F	229	232	parallel
Strand 3	F	263	267	parallel
Strand 4	F	131	136	parallel
Strand 5	F	290	293	parallel

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There are 2 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	299	300	first strand
Strand 2	F	303	304	anti-parallel

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There are 3 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	6	7	first strand
Strand 2	G	156	158	parallel
Strand 3	G	165	167	anti-parallel

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There are 5 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	169	173	first strand
Strand 2	G	228	232	parallel
Strand 3	G	263	267	parallel
Strand 4	G	131	136	parallel
Strand 5	G	291	293	parallel

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There are 2 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	X	120	121	first strand
Strand 2	X	161	164	anti-parallel

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There are 2 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	X	151	152	first strand
Strand 2	X	156	157	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8VCJ

Analysis of interatomic Contacts of Structural Units in PDB entry:
8VCJ