Analysis of interatomic Contacts of Structural Units in PDB entry:
8VCN


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8VCN entry

There is 1 chain in PDB entry 8VCN (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 HIS 1ALA 356
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 14 helices in PDB entry 8VCN. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
37 46Right-handed alpha
Helix 2
AA2
A
74 91Right-handed alpha
Helix 3
AA3
A
102 106Right-handed 310
Helix 4
AA4
A
107 112Right-handed alpha
Helix 5
AA5
A
143 164Right-handed alpha
Helix 6
AA6
A
177 184Right-handed alpha
Helix 7
AA7
A
197 202Right-handed alpha
Helix 8
AA8
A
202 217Right-handed alpha
Helix 9
AA9
A
239 254Right-handed alpha
Helix 10
AB1
A
277 285Right-handed alpha
Helix 11
AB2
A
296 306Right-handed alpha
Helix 12
AB3
A
315 321Right-handed alpha
Helix 13
AB4
A
323 331Right-handed alpha
Helix 14
AB5
A
338 342Right-handed 310
Back to top of page

There are 4 sheets in PDB entry 8VCN. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
8 10first strand
Strand 2
A
13 15anti-parallel
Back to list of sheets
Back to top of page

There are 9 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
19 21first strand
Strand 2
A
51 58parallel
Strand 3
A
95 100parallel
Strand 4
A
168 172parallel
Strand 5
A
221 225parallel
Strand 6
A
257 261parallel
Strand 7
A
289 292parallel
Strand 8
A
311 314parallel
Strand 9
A
19 21parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
116 117first strand
Strand 2
A
140 141parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
126 129first strand
Strand 2
A
132 135anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il