Analysis of interatomic Contacts of Structural Units in PDB entry:
8VCR

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8VCR entry

There are 9 chains in PDB entry 8VCR (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	ASN 703	SER 1147
D	GLN 1	SER 113
E	GLN 1	SER 113
F	GLU 1	LYS 107
G	GLU 1	LYS 107
H	GLN 1	SER 113
L	GLU 1	LYS 107
B	ASN 703	SER 1147
C	ASN 703	SER 1147

There are 60 helices in PDB entry 8VCR. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	737	743	Right-handed alpha
Helix 2	AA2	A	746	755	Right-handed alpha
Helix 3	AA3	A	758	783	Right-handed alpha
Helix 4	AA4	A	816	826	Right-handed alpha
Helix 5	AA5	A	832	842	Right-handed alpha
Helix 6	AA6	A	844	846	Right-handed 310
Helix 7	AA7	A	847	855	Right-handed alpha
Helix 8	AA8	A	866	885	Right-handed alpha
Helix 9	AA9	A	886	891	Right-handed alpha
Helix 10	AB1	A	897	910	Right-handed alpha
Helix 11	AB2	A	912	919	Right-handed alpha
Helix 12	AB3	A	919	941	Right-handed alpha
Helix 13	AB4	A	945	965	Right-handed alpha
Helix 14	AB5	A	966	968	Right-handed 310
Helix 15	AB6	A	976	984	Right-handed alpha
Helix 16	AB7	A	985	1033	Right-handed alpha
Helix 17	AB8	A	1140	1146	Right-handed alpha
Helix 18	AB9	D	61	65	Right-handed 310
Helix 19	AC1	D	83	87	Right-handed 310
Helix 20	AC2	E	61	65	Right-handed 310
Helix 21	AC3	E	83	87	Right-handed 310
Helix 22	AC4	F	79	83	Right-handed 310
Helix 23	AC5	G	79	83	Right-handed 310
Helix 24	AC6	H	61	65	Right-handed 310
Helix 25	AC7	H	83	87	Right-handed 310
Helix 26	AC8	L	79	83	Right-handed 310
Helix 27	AC9	B	737	743	Right-handed alpha
Helix 28	AD1	B	746	755	Right-handed alpha
Helix 29	AD2	B	758	783	Right-handed alpha
Helix 30	AD3	B	816	826	Right-handed alpha
Helix 31	AD4	B	832	842	Right-handed alpha
Helix 32	AD5	B	844	846	Right-handed 310
Helix 33	AD6	B	847	855	Right-handed alpha
Helix 34	AD7	B	866	885	Right-handed alpha
Helix 35	AD8	B	886	891	Right-handed alpha
Helix 36	AD9	B	897	910	Right-handed alpha
Helix 37	AE1	B	912	919	Right-handed alpha
Helix 38	AE2	B	919	941	Right-handed alpha
Helix 39	AE3	B	945	965	Right-handed alpha
Helix 40	AE4	B	966	968	Right-handed 310
Helix 41	AE5	B	976	984	Right-handed alpha
Helix 42	AE6	B	985	1033	Right-handed alpha
Helix 43	AE7	B	1140	1146	Right-handed alpha
Helix 44	AE8	C	737	743	Right-handed alpha
Helix 45	AE9	C	746	755	Right-handed alpha
Helix 46	AF1	C	758	783	Right-handed alpha
Helix 47	AF2	C	816	826	Right-handed alpha
Helix 48	AF3	C	832	842	Right-handed alpha
Helix 49	AF4	C	844	846	Right-handed 310
Helix 50	AF5	C	847	855	Right-handed alpha
Helix 51	AF6	C	866	885	Right-handed alpha
Helix 52	AF7	C	886	891	Right-handed alpha
Helix 53	AF8	C	897	910	Right-handed alpha
Helix 54	AF9	C	912	919	Right-handed alpha
Helix 55	AG1	C	919	941	Right-handed alpha
Helix 56	AG2	C	945	965	Right-handed alpha
Helix 57	AG3	C	966	968	Right-handed 310
Helix 58	AG4	C	976	984	Right-handed alpha
Helix 59	AG5	C	985	1033	Right-handed alpha
Helix 60	AG6	C	1140	1146	Right-handed alpha

There are 30 sheets in PDB entry 8VCR. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1, AD2, AD3,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	711	728	first strand
Strand 2	A	1059	1078	anti-parallel
Strand 3	A	1047	1056	anti-parallel

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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	711	728	first strand
Strand 2	A	1059	1078	anti-parallel
Strand 3	A	1094	1097	anti-parallel
Strand 4	A	1102	1105	anti-parallel
Strand 5	A	1113	1114	anti-parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	734	736	first strand
Strand 2	A	858	860	anti-parallel

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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1120	1125	first strand
Strand 2	A	1086	1090	anti-parallel
Strand 3	A	1081	1082	anti-parallel
Strand 4	A	1133	1134	parallel

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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	3	7	first strand
Strand 2	D	18	25	anti-parallel
Strand 3	D	77	82	anti-parallel
Strand 4	D	67	72	anti-parallel

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There are 6 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	11	12	first strand
Strand 2	D	107	111	parallel
Strand 3	D	88	100	anti-parallel
Strand 4	D	34	39	anti-parallel
Strand 5	D	45	52	anti-parallel
Strand 6	D	57	59	anti-parallel

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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	11	12	first strand
Strand 2	D	107	111	parallel
Strand 3	D	88	100	anti-parallel
Strand 4	D	100	103	anti-parallel

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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	3	7	first strand
Strand 2	E	18	25	anti-parallel
Strand 3	E	77	82	anti-parallel
Strand 4	E	67	72	anti-parallel

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There are 6 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	11	12	first strand
Strand 2	E	107	111	parallel
Strand 3	E	88	100	anti-parallel
Strand 4	E	34	39	anti-parallel
Strand 5	E	45	52	anti-parallel
Strand 6	E	57	59	anti-parallel

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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	11	12	first strand
Strand 2	E	107	111	parallel
Strand 3	E	88	100	anti-parallel
Strand 4	E	100	103	anti-parallel

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There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	4	6	first strand
Strand 2	F	19	25	anti-parallel
Strand 3	F	70	75	anti-parallel
Strand 4	F	62	67	anti-parallel

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There are 6 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	10	13	first strand
Strand 2	F	102	106	parallel
Strand 3	F	85	90	anti-parallel
Strand 4	F	33	38	anti-parallel
Strand 5	F	45	49	anti-parallel
Strand 6	F	53	54	anti-parallel

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There are 4 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	10	13	first strand
Strand 2	F	102	106	parallel
Strand 3	F	85	90	anti-parallel
Strand 4	F	97	98	anti-parallel

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There are 4 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	4	6	first strand
Strand 2	G	19	25	anti-parallel
Strand 3	G	70	75	anti-parallel
Strand 4	G	62	67	anti-parallel

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There are 6 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	10	13	first strand
Strand 2	G	102	106	parallel
Strand 3	G	85	90	anti-parallel
Strand 4	G	33	38	anti-parallel
Strand 5	G	45	49	anti-parallel
Strand 6	G	53	54	anti-parallel

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There are 4 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	10	13	first strand
Strand 2	G	102	106	parallel
Strand 3	G	85	90	anti-parallel
Strand 4	G	97	98	anti-parallel

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There are 4 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	3	7	first strand
Strand 2	H	18	25	anti-parallel
Strand 3	H	77	82	anti-parallel
Strand 4	H	67	72	anti-parallel

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There are 6 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	11	12	first strand
Strand 2	H	107	111	parallel
Strand 3	H	88	100	anti-parallel
Strand 4	H	34	39	anti-parallel
Strand 5	H	45	52	anti-parallel
Strand 6	H	57	59	anti-parallel

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There are 4 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	11	12	first strand
Strand 2	H	107	111	parallel
Strand 3	H	88	100	anti-parallel
Strand 4	H	100	103	anti-parallel

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There are 4 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	4	6	first strand
Strand 2	L	19	25	anti-parallel
Strand 3	L	70	75	anti-parallel
Strand 4	L	62	67	anti-parallel

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There are 6 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	10	13	first strand
Strand 2	L	102	106	parallel
Strand 3	L	85	90	anti-parallel
Strand 4	L	33	38	anti-parallel
Strand 5	L	45	49	anti-parallel
Strand 6	L	53	54	anti-parallel

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There are 4 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	10	13	first strand
Strand 2	L	102	106	parallel
Strand 3	L	85	90	anti-parallel
Strand 4	L	97	98	anti-parallel

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There are 3 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	711	728	first strand
Strand 2	B	1059	1078	anti-parallel
Strand 3	B	1047	1056	anti-parallel

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There are 5 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	711	728	first strand
Strand 2	B	1059	1078	anti-parallel
Strand 3	B	1094	1097	anti-parallel
Strand 4	B	1102	1105	anti-parallel
Strand 5	B	1113	1114	anti-parallel

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There are 2 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	734	736	first strand
Strand 2	B	858	860	anti-parallel

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There are 4 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	1120	1125	first strand
Strand 2	B	1086	1090	anti-parallel
Strand 3	B	1081	1082	anti-parallel
Strand 4	B	1133	1134	parallel

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There are 3 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	711	728	first strand
Strand 2	C	1059	1078	anti-parallel
Strand 3	C	1047	1056	anti-parallel

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There are 5 strands in AD1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	711	728	first strand
Strand 2	C	1059	1078	anti-parallel
Strand 3	C	1094	1097	anti-parallel
Strand 4	C	1102	1105	anti-parallel
Strand 5	C	1113	1114	anti-parallel

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There are 2 strands in AD2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	734	736	first strand
Strand 2	C	858	860	anti-parallel

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There are 4 strands in AD3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	1120	1125	first strand
Strand 2	C	1086	1090	anti-parallel
Strand 3	C	1081	1082	anti-parallel
Strand 4	C	1133	1134	parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8VCR

Analysis of interatomic Contacts of Structural Units in PDB entry:
8VCR