Analysis of interatomic Contacts of Structural Units in PDB entry:
8VCT

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8VCT entry

There are 10 chains in PDB entry 8VCT (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
G	ALA 3	VAL 405
X	MET 1	LEU 310
H	A 1	G 50
I	C 1	T 50
E	ALA 3	GLU 485
F	THR 4	GLU 485
C	ALA 3	VAL 405
B	THR 4	GLU 485
Y	MET 1	LEU 310
A	ALA 3	GLU 485

There are180 helices in PDB entry 8VCT. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	G	15	19	Right-handed 310
Helix 2	AA2	G	32	41	Right-handed alpha
Helix 3	AA3	G	47	51	Right-handed 310
Helix 4	AA4	G	54	64	Right-handed alpha
Helix 5	AA5	G	73	89	Right-handed alpha
Helix 6	AA6	G	100	115	Right-handed alpha
Helix 7	AA7	G	141	149	Right-handed alpha
Helix 8	AA8	G	150	152	Right-handed 310
Helix 9	AA9	G	181	188	Right-handed alpha
Helix 10	AB1	G	198	204	Right-handed alpha
Helix 11	AB2	G	209	224	Right-handed alpha
Helix 12	AB3	G	234	240	Right-handed 310
Helix 13	AB4	G	246	258	Right-handed alpha
Helix 14	AB5	G	268	270	Right-handed 310
Helix 15	AB6	G	271	277	Right-handed alpha
Helix 16	AB7	G	305	317	Right-handed alpha
Helix 17	AB8	G	329	341	Right-handed alpha
Helix 18	AB9	G	345	362	Right-handed alpha
Helix 19	AC1	G	367	379	Right-handed alpha
Helix 20	AC2	G	382	392	Right-handed alpha
Helix 21	AC3	G	393	399	Right-handed alpha
Helix 22	AC4	X	12	23	Right-handed alpha
Helix 23	AC5	X	28	37	Right-handed alpha
Helix 24	AC6	X	53	58	Right-handed alpha
Helix 25	AC7	X	66	74	Right-handed alpha
Helix 26	AC8	X	76	79	Right-handed 310
Helix 27	AC9	X	80	85	Right-handed alpha
Helix 28	AD1	X	85	98	Right-handed alpha
Helix 29	AD2	X	101	108	Right-handed alpha
Helix 30	AD3	X	124	135	Right-handed alpha
Helix 31	AD4	X	164	168	Right-handed 310
Helix 32	AD5	X	189	200	Right-handed alpha
Helix 33	AD6	X	201	203	Right-handed 310
Helix 34	AD7	X	205	210	Right-handed 310
Helix 35	AD8	X	214	229	Right-handed alpha
Helix 36	AD9	X	240	250	Right-handed alpha
Helix 37	AE1	X	251	258	Right-handed alpha
Helix 38	AE2	X	269	276	Right-handed alpha
Helix 39	AE3	X	283	295	Right-handed alpha
Helix 40	AE4	X	299	310	Right-handed alpha
Helix 41	AE5	E	47	53	Right-handed alpha
Helix 42	AE6	E	54	64	Right-handed alpha
Helix 43	AE7	E	65	68	Right-handed 310
Helix 44	AE8	E	73	89	Right-handed alpha
Helix 45	AE9	E	100	113	Right-handed alpha
Helix 46	AF1	E	141	151	Right-handed alpha
Helix 47	AF2	E	179	195	Right-handed alpha
Helix 48	AF3	E	198	204	Right-handed alpha
Helix 49	AF4	E	209	224	Right-handed alpha
Helix 50	AF5	E	233	237	Right-handed 310
Helix 51	AF6	E	238	243	Right-handed alpha
Helix 52	AF7	E	244	260	Right-handed alpha
Helix 53	AF8	E	270	275	Right-handed alpha
Helix 54	AF9	E	275	281	Right-handed alpha
Helix 55	AG1	E	305	317	Right-handed alpha
Helix 56	AG2	E	329	341	Right-handed alpha
Helix 57	AG3	E	343	362	Right-handed alpha
Helix 58	AG4	E	367	379	Right-handed alpha
Helix 59	AG5	E	382	392	Right-handed alpha
Helix 60	AG6	E	393	400	Right-handed alpha
Helix 61	AG7	E	408	421	Right-handed alpha
Helix 62	AG8	E	426	436	Right-handed alpha
Helix 63	AG9	E	440	449	Right-handed alpha
Helix 64	AH1	E	452	467	Right-handed alpha
Helix 65	AH2	E	474	485	Right-handed alpha
Helix 66	AH3	F	23	27	Right-handed 310
Helix 67	AH4	F	32	37	Right-handed alpha
Helix 68	AH5	F	47	51	Right-handed 310
Helix 69	AH6	F	54	64	Right-handed alpha
Helix 70	AH7	F	65	68	Right-handed 310
Helix 71	AH8	F	75	89	Right-handed alpha
Helix 72	AH9	F	100	114	Right-handed alpha
Helix 73	AI1	F	143	151	Right-handed alpha
Helix 74	AI2	F	179	195	Right-handed alpha
Helix 75	AI3	F	198	204	Right-handed alpha
Helix 76	AI4	F	209	224	Right-handed alpha
Helix 77	AI5	F	233	238	Right-handed 310
Helix 78	AI6	F	244	255	Right-handed alpha
Helix 79	AI7	F	268	276	Right-handed alpha
Helix 80	AI8	F	278	286	Right-handed alpha
Helix 81	AI9	F	305	317	Right-handed alpha
Helix 82	AJ1	F	329	341	Right-handed alpha
Helix 83	AJ2	F	343	362	Right-handed alpha
Helix 84	AJ3	F	367	379	Right-handed alpha
Helix 85	AJ4	F	382	392	Right-handed alpha
Helix 86	AJ5	F	393	400	Right-handed alpha
Helix 87	AJ6	F	407	424	Right-handed alpha
Helix 88	AJ7	F	428	433	Right-handed alpha
Helix 89	AJ8	F	440	451	Right-handed alpha
Helix 90	AJ9	F	455	467	Right-handed alpha
Helix 91	AK1	F	471	485	Right-handed alpha
Helix 92	AK2	C	21	26	Right-handed alpha
Helix 93	AK3	C	32	41	Right-handed alpha
Helix 94	AK4	C	48	52	Right-handed 310
Helix 95	AK5	C	54	63	Right-handed alpha
Helix 96	AK6	C	73	89	Right-handed alpha
Helix 97	AK7	C	100	115	Right-handed alpha
Helix 98	AK8	C	141	150	Right-handed alpha
Helix 99	AK9	C	182	196	Right-handed alpha
Helix 100	AL1	C	198	204	Right-handed alpha
Helix 101	AL2	C	209	224	Right-handed alpha
Helix 102	AL3	C	233	238	Right-handed 310
Helix 103	AL4	C	244	258	Right-handed alpha
Helix 104	AL5	C	268	270	Right-handed 310
Helix 105	AL6	C	271	276	Right-handed alpha
Helix 106	AL7	C	306	317	Right-handed alpha
Helix 107	AL8	C	329	341	Right-handed alpha
Helix 108	AL9	C	343	362	Right-handed alpha
Helix 109	AM1	C	367	378	Right-handed alpha
Helix 110	AM2	C	379	381	Right-handed 310
Helix 111	AM3	C	382	392	Right-handed alpha
Helix 112	AM4	C	393	399	Right-handed alpha
Helix 113	AM5	B	21	26	Right-handed alpha
Helix 114	AM6	B	32	39	Right-handed alpha
Helix 115	AM7	B	54	64	Right-handed alpha
Helix 116	AM8	B	65	68	Right-handed 310
Helix 117	AM9	B	73	88	Right-handed alpha
Helix 118	AN1	B	100	114	Right-handed alpha
Helix 119	AN2	B	179	195	Right-handed alpha
Helix 120	AN3	B	198	203	Right-handed alpha
Helix 121	AN4	B	209	224	Right-handed alpha
Helix 122	AN5	B	233	238	Right-handed 310
Helix 123	AN6	B	244	255	Right-handed alpha
Helix 124	AN7	B	256	258	Right-handed 310
Helix 125	AN8	B	270	276	Right-handed alpha
Helix 126	AN9	B	278	286	Right-handed alpha
Helix 127	AO1	B	305	318	Right-handed alpha
Helix 128	AO2	B	329	340	Right-handed alpha
Helix 129	AO3	B	343	362	Right-handed alpha
Helix 130	AO4	B	367	378	Right-handed alpha
Helix 131	AO5	B	382	392	Right-handed alpha
Helix 132	AO6	B	393	400	Right-handed alpha
Helix 133	AO7	B	407	421	Right-handed alpha
Helix 134	AO8	B	426	435	Right-handed alpha
Helix 135	AO9	B	437	447	Right-handed alpha
Helix 136	AP1	B	452	467	Right-handed alpha
Helix 137	AP2	B	471	485	Right-handed alpha
Helix 138	AP3	Y	12	24	Right-handed alpha
Helix 139	AP4	Y	28	36	Right-handed alpha
Helix 140	AP5	Y	53	59	Right-handed alpha
Helix 141	AP6	Y	66	74	Right-handed alpha
Helix 142	AP7	Y	76	79	Right-handed 310
Helix 143	AP8	Y	80	85	Right-handed alpha
Helix 144	AP9	Y	85	97	Right-handed alpha
Helix 145	AQ1	Y	100	107	Right-handed alpha
Helix 146	AQ2	Y	124	135	Right-handed alpha
Helix 147	AQ3	Y	189	200	Right-handed alpha
Helix 148	AQ4	Y	201	203	Right-handed 310
Helix 149	AQ5	Y	214	230	Right-handed alpha
Helix 150	AQ6	Y	240	250	Right-handed alpha
Helix 151	AQ7	Y	251	259	Right-handed alpha
Helix 152	AQ8	Y	269	277	Right-handed alpha
Helix 153	AQ9	Y	283	295	Right-handed alpha
Helix 154	AR1	Y	299	310	Right-handed alpha
Helix 155	AR2	A	21	26	Right-handed alpha
Helix 156	AR3	A	32	39	Right-handed alpha
Helix 157	AR4	A	47	53	Right-handed 310
Helix 158	AR5	A	54	64	Right-handed alpha
Helix 159	AR6	A	73	90	Right-handed alpha
Helix 160	AR7	A	100	113	Right-handed alpha
Helix 161	AR8	A	141	150	Right-handed alpha
Helix 162	AR9	A	179	196	Right-handed alpha
Helix 163	AS1	A	198	204	Right-handed alpha
Helix 164	AS2	A	209	224	Right-handed alpha
Helix 165	AS3	A	233	237	Right-handed 310
Helix 166	AS4	A	238	243	Right-handed alpha
Helix 167	AS5	A	245	260	Right-handed alpha
Helix 168	AS6	A	268	281	Right-handed alpha
Helix 169	AS7	A	305	317	Right-handed alpha
Helix 170	AS8	A	329	341	Right-handed alpha
Helix 171	AS9	A	343	362	Right-handed alpha
Helix 172	AT1	A	367	379	Right-handed alpha
Helix 173	AT2	A	382	392	Right-handed alpha
Helix 174	AT3	A	393	400	Right-handed alpha
Helix 175	AT4	A	407	421	Right-handed alpha
Helix 176	AT5	A	426	435	Right-handed alpha
Helix 177	AT6	A	440	448	Right-handed alpha
Helix 178	AT7	A	449	451	Right-handed 310
Helix 179	AT8	A	455	467	Right-handed alpha
Helix 180	AT9	A	471	485	Right-handed alpha

There are 17 sheets in PDB entry 8VCT. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	6	7	first strand
Strand 2	G	156	158	parallel
Strand 3	G	165	167	anti-parallel

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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	169	173	first strand
Strand 2	G	228	232	parallel
Strand 3	G	263	267	parallel
Strand 4	G	131	136	parallel
Strand 5	G	289	293	parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	299	300	first strand
Strand 2	G	303	304	anti-parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	X	232	233	first strand
Strand 2	X	236	237	anti-parallel

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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	132	135	first strand
Strand 2	E	263	267	parallel
Strand 3	E	229	232	parallel
Strand 4	E	171	173	parallel

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There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	156	158	first strand
Strand 2	E	165	167	anti-parallel
Strand 3	E	225	226	parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	299	300	first strand
Strand 2	E	303	304	anti-parallel

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There are 3 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	5	7	first strand
Strand 2	F	156	158	parallel
Strand 3	F	165	167	anti-parallel

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There are 5 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	169	173	first strand
Strand 2	F	228	232	parallel
Strand 3	F	263	267	parallel
Strand 4	F	132	135	parallel
Strand 5	F	291	292	parallel

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There are 7 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	6	7	first strand
Strand 2	C	156	158	parallel
Strand 3	C	165	173	anti-parallel
Strand 4	C	226	232	parallel
Strand 5	C	263	267	parallel
Strand 6	C	131	136	parallel
Strand 7	C	289	293	parallel

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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	299	300	first strand
Strand 2	C	303	304	anti-parallel

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There are 3 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	5	7	first strand
Strand 2	B	156	159	parallel
Strand 3	B	164	167	anti-parallel

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There are 5 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	171	173	first strand
Strand 2	B	229	232	parallel
Strand 3	B	263	267	parallel
Strand 4	B	131	135	parallel
Strand 5	B	290	292	parallel

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There are 2 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	Y	120	123	first strand
Strand 2	Y	159	164	anti-parallel

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There are 4 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	133	135	first strand
Strand 2	A	263	267	parallel
Strand 3	A	229	232	parallel
Strand 4	A	171	173	parallel

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There are 2 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	156	158	first strand
Strand 2	A	165	167	anti-parallel

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There are 2 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	299	300	first strand
Strand 2	A	303	304	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8VCT

Analysis of interatomic Contacts of Structural Units in PDB entry:
8VCT