Analysis of interatomic Contacts of Structural Units in PDB entry:
8VCW


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8VCW entry

There is 1 chain in PDB entry 8VCW (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 1VAL 327
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 14 helices in PDB entry 8VCW. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
2 12Right-handed alpha
Helix 2
AA2
A
23 28Right-handed alpha
Helix 3
AA3
A
29 45Right-handed alpha
Helix 4
AA4
A
86 100Right-handed alpha
Helix 5
AA5
A
115 133Right-handed alpha
Helix 6
AA6
A
145 156Right-handed alpha
Helix 7
AA7
A
170 174Right-handed 310
Helix 8
AA8
A
179 194Right-handed alpha
Helix 9
AA9
A
208 223Right-handed alpha
Helix 10
AB1
A
247 262Right-handed alpha
Helix 11
AB2
A
272 281Right-handed 310
Helix 12
AB3
A
282 286Right-handed 310
Helix 13
AB4
A
304 315Right-handed alpha
Helix 14
AB5
A
321 325Right-handed 310
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There is 1 sheet (AA1) in PDB entry 8VCW.

There are 10 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
201 203first strand
Strand 2
A
226 231parallel
Strand 3
A
266 269parallel
Strand 4
A
290 292parallel
Strand 5
A
50 58parallel
Strand 6
A
104 109parallel
Strand 7
A
136 140parallel
Strand 8
A
159 161parallel
Strand 9
A
196 198parallel
Strand 10
A
226 231parallel
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