Analysis of interatomic Contacts of Structural Units in PDB entry:
8VCZ


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8VCZ entry

There is 1 chain in PDB entry 8VCZ (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 SER 0ALA 270
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 15 helices in PDB entry 8VCZ. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
2 9Right-handed alpha
Helix 2
AA2
A
30 35Right-handed 310
Helix 3
AA3
A
37 41Right-handed 310
Helix 4
AA4
A
59 63Right-handed 310
Helix 5
AA5
A
66 70Right-handed 310
Helix 6
AA6
A
71 85Right-handed alpha
Helix 7
AA7
A
96 109Right-handed alpha
Helix 8
AA8
A
136 150Right-handed alpha
Helix 9
AA9
A
150 164Right-handed alpha
Helix 10
AB1
A
169 180Right-handed alpha
Helix 11
AB2
A
183 196Right-handed alpha
Helix 12
AB3
A
199 206Right-handed 310
Helix 13
AB4
A
223 233Right-handed alpha
Helix 14
AB5
A
248 253Right-handed alpha
Helix 15
AB6
A
253 267Right-handed alpha
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There is 1 sheet (AA1) in PDB entry 8VCZ.

There are 7 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
11 13first strand
Strand 2
A
45 49anti-parallel
Strand 3
A
19 24parallel
Strand 4
A
90 95parallel
Strand 5
A
113 119parallel
Strand 6
A
210 217parallel
Strand 7
A
237 245parallel
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