Analysis of interatomic Contacts of Structural Units in PDB entry:
8VD0


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8VD0 entry

There are 7 chains in PDB entry 8VD0 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ASP 0GLU 181
C
 GLY -2ARG 207
F
 ILE 1GLU 179
H
 GLY -2ARG 207
D
 MET 2SER 219
E
 GLY 3ASP 266
I
 MET 2ALA 100
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 24 helices in PDB entry 8VD0. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
45 52Right-handed alpha
Helix 2
AA2
A
55 77Right-handed alpha
Helix 3
AA3
C
72 82Right-handed alpha
Helix 4
AA4
C
82 96Right-handed alpha
Helix 5
AA5
C
96 107Right-handed alpha
Helix 6
AA6
C
108 111Right-handed 310
Helix 7
AA7
F
45 52Right-handed alpha
Helix 8
AA8
F
55 77Right-handed alpha
Helix 9
AA9
H
72 82Right-handed alpha
Helix 10
AB1
H
82 96Right-handed alpha
Helix 11
AB2
H
96 107Right-handed alpha
Helix 12
AB3
H
108 111Right-handed 310
Helix 13
AB4
D
95 99Right-handed 310
Helix 14
AB5
D
182 185Right-handed 310
Helix 15
AB6
E
95 99Right-handed 310
Helix 16
AB7
E
127 131Right-handed 310
Helix 17
AB8
E
142 150Right-handed alpha
Helix 18
AB9
E
209 214Right-handed alpha
Helix 19
AC1
I
95 99Right-handed 310
Helix 20
AC2
I
201 205Right-handed 310
Helix 21
AC3
J
95 99Right-handed 310
Helix 22
AC4
J
127 131Right-handed 310
Helix 23
AC5
J
142 150Right-handed alpha
Helix 24
AC6
J
209 213Right-handed alpha
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There are 30 sheets in PDB entry 8VD0. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1, AD2, AD3,

There are 8 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
40 43first strand
Strand 2
A
29 35anti-parallel
Strand 3
A
19 26anti-parallel
Strand 4
A
5 14anti-parallel
Strand 5
C
26 36anti-parallel
Strand 6
C
41 50anti-parallel
Strand 7
C
53 59anti-parallel
Strand 8
C
65 67anti-parallel
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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
88 93first strand
Strand 2
A
103 112anti-parallel
Strand 3
A
145 153anti-parallel
Strand 4
A
132 134anti-parallel
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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
88 93first strand
Strand 2
A
103 112anti-parallel
Strand 3
A
145 153anti-parallel
Strand 4
A
138 139anti-parallel
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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
126 128first strand
Strand 2
A
118 123anti-parallel
Strand 3
A
161 166anti-parallel
Strand 4
A
174 177anti-parallel
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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
116 120first strand
Strand 2
C
132 140anti-parallel
Strand 3
C
173 180anti-parallel
Strand 4
C
160 162anti-parallel
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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
116 120first strand
Strand 2
C
132 140anti-parallel
Strand 3
C
173 180anti-parallel
Strand 4
C
166 167anti-parallel
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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
154 155first strand
Strand 2
C
146 151anti-parallel
Strand 3
C
189 194anti-parallel
Strand 4
C
202 205anti-parallel
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There are 8 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
F
40 43first strand
Strand 2
F
29 35anti-parallel
Strand 3
F
19 26anti-parallel
Strand 4
F
5 14anti-parallel
Strand 5
H
26 36anti-parallel
Strand 6
H
41 50anti-parallel
Strand 7
H
53 59anti-parallel
Strand 8
H
65 67anti-parallel
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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
F
88 93first strand
Strand 2
F
103 112anti-parallel
Strand 3
F
145 153anti-parallel
Strand 4
F
132 134anti-parallel
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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
F
88 93first strand
Strand 2
F
103 112anti-parallel
Strand 3
F
145 153anti-parallel
Strand 4
F
138 139anti-parallel
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There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
F
126 128first strand
Strand 2
F
118 123anti-parallel
Strand 3
F
161 166anti-parallel
Strand 4
F
174 177anti-parallel
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There are 4 strands in AB3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
H
116 120first strand
Strand 2
H
132 140anti-parallel
Strand 3
H
173 180anti-parallel
Strand 4
H
160 162anti-parallel
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There are 4 strands in AB4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
H
116 120first strand
Strand 2
H
132 140anti-parallel
Strand 3
H
173 180anti-parallel
Strand 4
H
166 167anti-parallel
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There are 4 strands in AB5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
H
154 155first strand
Strand 2
H
146 151anti-parallel
Strand 3
H
189 194anti-parallel
Strand 4
H
202 206anti-parallel
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There are 5 strands in AB6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
10 14first strand
Strand 2
D
123 128parallel
Strand 3
D
100 107anti-parallel
Strand 4
D
38 44anti-parallel
Strand 5
D
51 56anti-parallel
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There are 4 strands in AB7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
19 24first strand
Strand 2
D
86 91anti-parallel
Strand 3
D
77 80anti-parallel
Strand 4
D
66 67anti-parallel
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There are 8 strands in AB8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
171 173first strand
Strand 2
D
186 195anti-parallel
Strand 3
D
150 155anti-parallel
Strand 4
D
137 143anti-parallel
Strand 5
E
135 140anti-parallel
Strand 6
E
151 161anti-parallel
Strand 7
E
199 208anti-parallel
Strand 8
E
181 183anti-parallel
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There are 8 strands in AB9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
177 181first strand
Strand 2
D
186 195anti-parallel
Strand 3
D
150 155anti-parallel
Strand 4
D
137 143anti-parallel
Strand 5
E
135 140anti-parallel
Strand 6
E
151 161anti-parallel
Strand 7
E
199 208anti-parallel
Strand 8
E
188 189anti-parallel
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There are 4 strands in AC1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
5 7first strand
Strand 2
E
19 24anti-parallel
Strand 3
E
87 91anti-parallel
Strand 4
E
76 80anti-parallel
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There are 6 strands in AC2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
10 14first strand
Strand 2
E
120 125parallel
Strand 3
E
100 107anti-parallel
Strand 4
E
38 45anti-parallel
Strand 5
E
49 57anti-parallel
Strand 6
E
64 68anti-parallel
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There are 4 strands in AC3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
10 14first strand
Strand 2
E
120 125parallel
Strand 3
E
100 107anti-parallel
Strand 4
E
115 116anti-parallel
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There are 4 strands in AC4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
175 177first strand
Strand 2
E
166 172anti-parallel
Strand 3
E
218 225anti-parallel
Strand 4
E
255 262anti-parallel
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There are 5 strands in AC5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
I
10 14first strand
Strand 2
I
123 128parallel
Strand 3
I
100 107anti-parallel
Strand 4
I
38 44anti-parallel
Strand 5
I
51 56anti-parallel
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There are 4 strands in AC6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
I
19 24first strand
Strand 2
I
86 91anti-parallel
Strand 3
I
77 80anti-parallel
Strand 4
I
65 67anti-parallel
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There are 8 strands in AC7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
I
171 173first strand
Strand 2
I
186 195anti-parallel
Strand 3
I
150 155anti-parallel
Strand 4
I
137 143anti-parallel
Strand 5
J
135 140anti-parallel
Strand 6
J
151 161anti-parallel
Strand 7
J
199 208anti-parallel
Strand 8
J
181 183anti-parallel
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There are 8 strands in AC8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
I
177 181first strand
Strand 2
I
186 195anti-parallel
Strand 3
I
150 155anti-parallel
Strand 4
I
137 143anti-parallel
Strand 5
J
135 140anti-parallel
Strand 6
J
151 161anti-parallel
Strand 7
J
199 208anti-parallel
Strand 8
J
188 189anti-parallel
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There are 4 strands in AC9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
J
5 7first strand
Strand 2
J
19 24anti-parallel
Strand 3
J
87 91anti-parallel
Strand 4
J
76 80anti-parallel
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There are 6 strands in AD1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
J
10 14first strand
Strand 2
J
120 125parallel
Strand 3
J
100 107anti-parallel
Strand 4
J
38 45anti-parallel
Strand 5
J
49 57anti-parallel
Strand 6
J
64 68anti-parallel
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There are 4 strands in AD2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
J
10 14first strand
Strand 2
J
120 125parallel
Strand 3
J
100 107anti-parallel
Strand 4
J
115 116anti-parallel
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There are 4 strands in AD3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
J
175 177first strand
Strand 2
J
166 172anti-parallel
Strand 3
J
218 225anti-parallel
Strand 4
J
255 262anti-parallel
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