Analysis of interatomic Contacts of Structural Units in PDB entry:
8VD2


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8VD2 entry

There are 5 chains in PDB entry 8VD2 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ILE 1PRO 180
B
 SER 3ARG 189
C
 GLY -2CYS 11
D
 MET 2PRO 212
E
 GLY 3ALA 265
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 11 helices in PDB entry 8VD2. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
45 52Right-handed alpha
Helix 2
AA2
A
55 77Right-handed alpha
Helix 3
AA3
B
54 64Right-handed alpha
Helix 4
AA4
B
64 78Right-handed alpha
Helix 5
AA5
B
78 89Right-handed alpha
Helix 6
AA6
B
90 93Right-handed 310
Helix 7
AA7
D
95 99Right-handed 310
Helix 8
AA8
E
95 99Right-handed 310
Helix 9
AA9
E
127 131Right-handed 310
Helix 10
AB1
E
142 150Right-handed alpha
Helix 11
AB2
E
209 213Right-handed alpha
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There are 15 sheets in PDB entry 8VD2. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6,

There are 8 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
40 43first strand
Strand 2
A
29 35anti-parallel
Strand 3
A
19 26anti-parallel
Strand 4
A
5 14anti-parallel
Strand 5
B
8 18anti-parallel
Strand 6
B
23 32anti-parallel
Strand 7
B
35 41anti-parallel
Strand 8
B
47 49anti-parallel
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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
88 93first strand
Strand 2
A
103 112anti-parallel
Strand 3
A
145 153anti-parallel
Strand 4
A
132 134anti-parallel
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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
88 93first strand
Strand 2
A
103 112anti-parallel
Strand 3
A
145 153anti-parallel
Strand 4
A
138 139anti-parallel
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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
126 128first strand
Strand 2
A
117 123anti-parallel
Strand 3
A
161 167anti-parallel
Strand 4
A
174 177anti-parallel
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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
98 103first strand
Strand 2
B
114 122anti-parallel
Strand 3
B
155 162anti-parallel
Strand 4
B
142 144anti-parallel
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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
98 103first strand
Strand 2
B
114 122anti-parallel
Strand 3
B
155 162anti-parallel
Strand 4
B
148 149anti-parallel
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There are 3 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
128 132first strand
Strand 2
B
172 177anti-parallel
Strand 3
B
180 187anti-parallel
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There are 5 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
10 14first strand
Strand 2
D
123 128parallel
Strand 3
D
100 107anti-parallel
Strand 4
D
38 44anti-parallel
Strand 5
D
51 56anti-parallel
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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
19 24first strand
Strand 2
D
86 91anti-parallel
Strand 3
D
77 80anti-parallel
Strand 4
D
66 67anti-parallel
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There are 8 strands in AB1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
171 173first strand
Strand 2
D
186 195anti-parallel
Strand 3
D
150 155anti-parallel
Strand 4
D
137 143anti-parallel
Strand 5
E
135 140anti-parallel
Strand 6
E
151 161anti-parallel
Strand 7
E
199 208anti-parallel
Strand 8
E
181 183anti-parallel
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There are 8 strands in AB2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
177 181first strand
Strand 2
D
186 195anti-parallel
Strand 3
D
150 155anti-parallel
Strand 4
D
137 143anti-parallel
Strand 5
E
135 140anti-parallel
Strand 6
E
151 161anti-parallel
Strand 7
E
199 208anti-parallel
Strand 8
E
188 189anti-parallel
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There are 4 strands in AB3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
5 7first strand
Strand 2
E
19 24anti-parallel
Strand 3
E
87 91anti-parallel
Strand 4
E
76 80anti-parallel
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There are 6 strands in AB4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
10 14first strand
Strand 2
E
120 125parallel
Strand 3
E
100 107anti-parallel
Strand 4
E
38 45anti-parallel
Strand 5
E
49 57anti-parallel
Strand 6
E
64 68anti-parallel
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There are 4 strands in AB5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
10 14first strand
Strand 2
E
120 125parallel
Strand 3
E
100 107anti-parallel
Strand 4
E
115 116anti-parallel
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There are 4 strands in AB6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
175 177first strand
Strand 2
E
166 172anti-parallel
Strand 3
E
218 225anti-parallel
Strand 4
E
255 262anti-parallel
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