Analysis of interatomic Contacts of Structural Units in PDB entry:
8VDA


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8VDA entry

There is 1 chain in PDB entry 8VDA (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 LYS 4ARG 314
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 17 helices in PDB entry 8VDA. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
21 28Right-handed alpha
Helix 2
AA2
A
31 40Right-handed alpha
Helix 3
AA3
A
52 69Right-handed alpha
Helix 4
AA4
A
71 75Right-handed 310
Helix 5
AA5
A
91 100Right-handed alpha
Helix 6
AA6
A
112 114Right-handed 310
Helix 7
AA7
A
115 130Right-handed alpha
Helix 8
AA8
A
145 148Right-handed 310
Helix 9
AA9
A
152 157Right-handed alpha
Helix 10
AB1
A
186 190Right-handed 310
Helix 11
AB2
A
203 226Right-handed alpha
Helix 12
AB3
A
229 233Right-handed 310
Helix 13
AB4
A
242 254Right-handed alpha
Helix 14
AB5
A
256 260Right-handed 310
Helix 15
AB6
A
263 268Right-handed alpha
Helix 16
AB7
A
270 272Right-handed 310
Helix 17
AB8
A
273 285Right-handed alpha
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There are 4 sheets in PDB entry 8VDA. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
5 13first strand
Strand 2
A
161 170anti-parallel
Strand 3
A
136 143anti-parallel
Strand 4
A
77 81parallel
Strand 5
A
106 110parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
17 20first strand
Strand 2
A
43 46anti-parallel
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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
176 184first strand
Strand 2
A
304 311anti-parallel
Strand 3
A
293 300anti-parallel
Strand 4
A
235 238parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
192 194first strand
Strand 2
A
200 202anti-parallel
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