Analysis of interatomic Contacts of Structural Units in PDB entry:
8VDF


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8VDF entry

There are 3 chains in PDB entry 8VDF (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 HIS 577ILE 714
H
 GLN 3THR 110
L
 PRO 8LEU 106
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 9 helices in PDB entry 8VDF. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
577 598Right-handed alpha
Helix 2
AA2
A
598 603Right-handed alpha
Helix 3
AA3
A
614 636Right-handed alpha
Helix 4
AA4
A
652 657Right-handed alpha
Helix 5
AA5
A
660 669Right-handed alpha
Helix 6
AA6
A
670 685Right-handed alpha
Helix 7
AA7
A
700 714Right-handed alpha
Helix 8
AA8
H
83 87Right-handed 310
Helix 9
AA9
L
76 80Right-handed 310
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There are 5 sheets in PDB entry 8VDF. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
H
4 7first strand
Strand 2
H
18 24anti-parallel
Strand 3
H
77 82anti-parallel
Strand 4
H
68 72anti-parallel
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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
H
57 59first strand
Strand 2
H
45 51anti-parallel
Strand 3
H
33 39anti-parallel
Strand 4
H
89 95anti-parallel
Strand 5
H
102 103anti-parallel
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There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
H
57 59first strand
Strand 2
H
45 51anti-parallel
Strand 3
H
33 39anti-parallel
Strand 4
H
89 95anti-parallel
Strand 5
H
107 108anti-parallel
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There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
L
9 12first strand
Strand 2
L
101 105parallel
Strand 3
L
82 83anti-parallel
Strand 4
L
32 35anti-parallel
Strand 5
L
43 45anti-parallel
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There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
L
18 21first strand
Strand 2
L
68 72anti-parallel
Strand 3
L
59 63anti-parallel
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