Analysis of interatomic Contacts of Structural Units in PDB entry:
8VDK


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8VDK entry

There is 1 chain in PDB entry 8VDK (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 SER 1TYR 439
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 7 helices in PDB entry 8VDK. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
4 6Right-handed 310
Helix 2
AA2
A
64 71Right-handed 310
Helix 3
AA3
A
90 92Right-handed 310
Helix 4
AA4
A
101 106Right-handed alpha
Helix 5
AA5
A
121 124Right-handed 310
Helix 6
AA6
A
240 244Right-handed 310
Helix 7
AA7
A
248 252Right-handed 310
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There are 6 sheets in PDB entry 8VDK. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
8 17first strand
Strand 2
A
31 40anti-parallel
Strand 3
A
110 119anti-parallel
Strand 4
A
58 59anti-parallel
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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
74 75first strand
Strand 2
A
82 89anti-parallel
Strand 3
A
94 99anti-parallel
Strand 4
A
49 54anti-parallel
Strand 5
A
128 137anti-parallel
Strand 6
A
140 148anti-parallel
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There are 6 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
154 156first strand
Strand 2
A
159 170anti-parallel
Strand 3
A
179 187anti-parallel
Strand 4
A
274 281anti-parallel
Strand 5
A
221 226anti-parallel
Strand 6
A
245 246anti-parallel
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There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
255 258first strand
Strand 2
A
262 270anti-parallel
Strand 3
A
194 202anti-parallel
Strand 4
A
291 299anti-parallel
Strand 5
A
306 313anti-parallel
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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
376 382first strand
Strand 2
A
327 335anti-parallel
Strand 3
A
427 435parallel
Strand 4
A
399 400anti-parallel
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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
364 370first strand
Strand 2
A
354 359anti-parallel
Strand 3
A
385 392anti-parallel
Strand 4
A
417 422anti-parallel
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