Analysis of interatomic Contacts of Structural Units in PDB entry:
8VDL


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8VDL entry

There are 3 chains in PDB entry 8VDL (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
C
 PHE 575ILE 709
H
 GLU 1LYS 230
L
 SER 2THR 209
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 14 helices in PDB entry 8VDL. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
C
575 589Right-handed alpha
Helix 2
AA2
C
615 627Right-handed alpha
Helix 3
AA3
C
649 653Right-handed alpha
Helix 4
AA4
C
654 660Right-handed alpha
Helix 5
AA5
C
664 679Right-handed alpha
Helix 6
AA6
C
698 707Right-handed alpha
Helix 7
AA7
H
28 32Right-handed 310
Helix 8
AA8
H
87 91Right-handed 310
Helix 9
AA9
H
103 107Right-handed 310
Helix 10
AB1
H
172 174Right-handed 310
Helix 11
AB2
H
203 205Right-handed 310
Helix 12
AB3
H
217 220Right-handed 310
Helix 13
AB4
L
121 127Right-handed alpha
Helix 14
AB5
L
181 187Right-handed alpha
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There are 12 sheets in PDB entry 8VDL. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
H
3 7first strand
Strand 2
H
17 25anti-parallel
Strand 3
H
78 84anti-parallel
Strand 4
H
68 73anti-parallel
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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
H
10 12first strand
Strand 2
H
123 127parallel
Strand 3
H
92 99anti-parallel
Strand 4
H
34 39anti-parallel
Strand 5
H
46 51anti-parallel
Strand 6
H
58 60anti-parallel
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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
H
10 12first strand
Strand 2
H
123 127parallel
Strand 3
H
92 99anti-parallel
Strand 4
H
116 119anti-parallel
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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
H
136 140first strand
Strand 2
H
151 161anti-parallel
Strand 3
H
192 201anti-parallel
Strand 4
H
179 181anti-parallel
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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
H
136 140first strand
Strand 2
H
151 161anti-parallel
Strand 3
H
192 201anti-parallel
Strand 4
H
185 186anti-parallel
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There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
H
167 170first strand
Strand 2
H
211 216anti-parallel
Strand 3
H
221 226anti-parallel
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There are 5 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
L
9 12first strand
Strand 2
L
101 105parallel
Strand 3
L
81 89anti-parallel
Strand 4
L
31 35anti-parallel
Strand 5
L
42 45anti-parallel
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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
L
9 12first strand
Strand 2
L
101 105parallel
Strand 3
L
81 89anti-parallel
Strand 4
L
94 97anti-parallel
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There are 3 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
L
18 23first strand
Strand 2
L
67 72anti-parallel
Strand 3
L
59 64anti-parallel
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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
L
114 118first strand
Strand 2
L
130 139anti-parallel
Strand 3
L
172 180anti-parallel
Strand 4
L
159 161anti-parallel
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There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
L
114 118first strand
Strand 2
L
130 139anti-parallel
Strand 3
L
172 180anti-parallel
Strand 4
L
165 166anti-parallel
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There are 4 strands in AB3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
L
153 154first strand
Strand 2
L
144 150anti-parallel
Strand 3
L
191 197anti-parallel
Strand 4
L
200 206anti-parallel
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