Analysis of interatomic Contacts of Structural Units in PDB entry:
8VDO


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8VDO entry

There is 1 chain in PDB entry 8VDO (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 VAL 310VAL 2135
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 57 helices in PDB entry 8VDO. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
384 400Right-handed alpha
Helix 2
AA2
A
489 515Right-handed alpha
Helix 3
AA3
A
525 561Right-handed alpha
Helix 4
AA4
A
569 600Right-handed alpha
Helix 5
AA5
A
601 603Right-handed 310
Helix 6
AA6
A
605 626Right-handed alpha
Helix 7
AA7
A
633 655Right-handed alpha
Helix 8
AA8
A
661 693Right-handed alpha
Helix 9
AA9
A
695 724Right-handed alpha
Helix 10
AB1
A
729 756Right-handed alpha
Helix 11
AB2
A
759 789Right-handed alpha
Helix 12
AB3
A
799 815Right-handed alpha
Helix 13
AB4
A
818 847Right-handed alpha
Helix 14
AB5
A
849 880Right-handed alpha
Helix 15
AB6
A
883 905Right-handed alpha
Helix 16
AB7
A
907 941Right-handed alpha
Helix 17
AB8
A
948 976Right-handed alpha
Helix 18
AB9
A
979 1008Right-handed alpha
Helix 19
AC1
A
1009 1011Right-handed 310
Helix 20
AC2
A
1013 1046Right-handed alpha
Helix 21
AC3
A
1048 1073Right-handed alpha
Helix 22
AC4
A
1083 1112Right-handed alpha
Helix 23
AC5
A
1113 1142Right-handed alpha
Helix 24
AC6
A
1144 1175Right-handed alpha
Helix 25
AC7
A
1178 1202Right-handed alpha
Helix 26
AC8
A
1203 1205Right-handed 310
Helix 27
AC9
A
1206 1225Right-handed alpha
Helix 28
AD1
A
1234 1260Right-handed alpha
Helix 29
AD2
A
1263 1291Right-handed alpha
Helix 30
AD3
A
1294 1325Right-handed alpha
Helix 31
AD4
A
1328 1353Right-handed alpha
Helix 32
AD5
A
1359 1374Right-handed alpha
Helix 33
AD6
A
1375 1378Right-handed 310
Helix 34
AD7
A
1388 1417Right-handed alpha
Helix 35
AD8
A
1418 1450Right-handed alpha
Helix 36
AD9
A
1463 1483Right-handed alpha
Helix 37
AE1
A
1487 1516Right-handed alpha
Helix 38
AE2
A
1518 1547Right-handed alpha
Helix 39
AE3
A
1551 1577Right-handed alpha
Helix 40
AE4
A
1589 1623Right-handed alpha
Helix 41
AE5
A
1626 1655Right-handed alpha
Helix 42
AE6
A
1657 1684Right-handed alpha
Helix 43
AE7
A
1694 1722Right-handed alpha
Helix 44
AE8
A
1723 1736Right-handed alpha
Helix 45
AE9
A
1737 1752Right-handed alpha
Helix 46
AF1
A
1754 1783Right-handed alpha
Helix 47
AF2
A
1789 1821Right-handed alpha
Helix 48
AF3
A
1826 1838Right-handed alpha
Helix 49
AF4
A
1849 1878Right-handed alpha
Helix 50
AF5
A
1881 1907Right-handed alpha
Helix 51
AF6
A
1909 1940Right-handed alpha
Helix 52
AF7
A
1943 1972Right-handed alpha
Helix 53
AF8
A
1972 2001Right-handed alpha
Helix 54
AF9
A
2014 2037Right-handed alpha
Helix 55
AG1
A
2040 2070Right-handed alpha
Helix 56
AG2
A
2073 2102Right-handed alpha
Helix 57
AG3
A
2108 2135Right-handed alpha
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There are 2 sheets in PDB entry 8VDO. Click on sheet of interest to get list of strands forming it: AA1, AA2,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
311 318first strand
Strand 2
A
325 332anti-parallel
Strand 3
A
336 340anti-parallel
Strand 4
A
347 352anti-parallel
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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
358 361first strand
Strand 2
A
366 369anti-parallel
Strand 3
A
378 380anti-parallel
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