Analysis of interatomic Contacts of Structural Units in PDB entry:
8VDP


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8VDP entry

There is 1 chain in PDB entry 8VDP (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ASP 208LYS 2291
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 68 helices in PDB entry 8VDP. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
208 225Right-handed alpha
Helix 2
AA2
A
231 247Right-handed alpha
Helix 3
AA3
A
270 274Right-handed 310
Helix 4
AA4
A
275 287Right-handed alpha
Helix 5
AA5
A
291 305Right-handed alpha
Helix 6
AA6
A
354 356Right-handed 310
Helix 7
AA7
A
384 403Right-handed alpha
Helix 8
AA8
A
489 512Right-handed alpha
Helix 9
AA9
A
513 515Right-handed 310
Helix 10
AB1
A
525 562Right-handed alpha
Helix 11
AB2
A
569 601Right-handed alpha
Helix 12
AB3
A
605 626Right-handed alpha
Helix 13
AB4
A
633 656Right-handed alpha
Helix 14
AB5
A
661 693Right-handed alpha
Helix 15
AB6
A
697 724Right-handed alpha
Helix 16
AB7
A
725 727Right-handed 310
Helix 17
AB8
A
729 756Right-handed alpha
Helix 18
AB9
A
760 789Right-handed alpha
Helix 19
AC1
A
798 815Right-handed alpha
Helix 20
AC2
A
818 847Right-handed alpha
Helix 21
AC3
A
849 880Right-handed alpha
Helix 22
AC4
A
883 905Right-handed alpha
Helix 23
AC5
A
907 941Right-handed alpha
Helix 24
AC6
A
948 976Right-handed alpha
Helix 25
AC7
A
979 1008Right-handed alpha
Helix 26
AC8
A
1013 1045Right-handed alpha
Helix 27
AC9
A
1051 1074Right-handed alpha
Helix 28
AD1
A
1083 1111Right-handed alpha
Helix 29
AD2
A
1115 1142Right-handed alpha
Helix 30
AD3
A
1144 1175Right-handed alpha
Helix 31
AD4
A
1178 1203Right-handed alpha
Helix 32
AD5
A
1208 1225Right-handed alpha
Helix 33
AD6
A
1234 1260Right-handed alpha
Helix 34
AD7
A
1263 1292Right-handed alpha
Helix 35
AD8
A
1294 1325Right-handed alpha
Helix 36
AD9
A
1328 1353Right-handed alpha
Helix 37
AE1
A
1360 1379Right-handed alpha
Helix 38
AE2
A
1388 1417Right-handed alpha
Helix 39
AE3
A
1418 1451Right-handed alpha
Helix 40
AE4
A
1463 1483Right-handed alpha
Helix 41
AE5
A
1487 1516Right-handed alpha
Helix 42
AE6
A
1518 1545Right-handed alpha
Helix 43
AE7
A
1551 1576Right-handed alpha
Helix 44
AE8
A
1578 1583Right-handed alpha
Helix 45
AE9
A
1589 1623Right-handed alpha
Helix 46
AF1
A
1626 1655Right-handed alpha
Helix 47
AF2
A
1659 1684Right-handed alpha
Helix 48
AF3
A
1694 1722Right-handed alpha
Helix 49
AF4
A
1724 1752Right-handed alpha
Helix 50
AF5
A
1754 1783Right-handed alpha
Helix 51
AF6
A
1789 1821Right-handed alpha
Helix 52
AF7
A
1827 1840Right-handed alpha
Helix 53
AF8
A
1849 1878Right-handed alpha
Helix 54
AF9
A
1881 1899Right-handed alpha
Helix 55
AG1
A
1899 1907Right-handed alpha
Helix 56
AG2
A
1909 1940Right-handed alpha
Helix 57
AG3
A
1943 1970Right-handed alpha
Helix 58
AG4
A
1975 2001Right-handed alpha
Helix 59
AG5
A
2012 2037Right-handed alpha
Helix 60
AG6
A
2040 2070Right-handed alpha
Helix 61
AG7
A
2073 2101Right-handed alpha
Helix 62
AG8
A
2108 2136Right-handed alpha
Helix 63
AG9
A
2137 2139Right-handed 310
Helix 64
AH1
A
2140 2162Right-handed alpha
Helix 65
AH2
A
2171 2196Right-handed alpha
Helix 66
AH3
A
2197 2224Right-handed alpha
Helix 67
AH4
A
2229 2260Right-handed alpha
Helix 68
AH5
A
2262 2290Right-handed alpha
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There is 1 sheet (AA1) in PDB entry 8VDP.

There are 7 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
347 352first strand
Strand 2
A
336 340anti-parallel
Strand 3
A
325 332anti-parallel
Strand 4
A
311 318anti-parallel
Strand 5
A
378 381anti-parallel
Strand 6
A
365 368anti-parallel
Strand 7
A
360 361anti-parallel
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