Analysis of interatomic Contacts of Structural Units in PDB entry:
8VDR


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8VDR entry

There is 1 chain in PDB entry 8VDR (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ASP 208GLU 2138
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 63 helices in PDB entry 8VDR. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
208 225Right-handed alpha
Helix 2
AA2
A
231 246Right-handed alpha
Helix 3
AA3
A
275 287Right-handed alpha
Helix 4
AA4
A
290 305Right-handed alpha
Helix 5
AA5
A
354 356Right-handed 310
Helix 6
AA6
A
384 403Right-handed alpha
Helix 7
AA7
A
489 514Right-handed alpha
Helix 8
AA8
A
525 562Right-handed alpha
Helix 9
AA9
A
569 601Right-handed alpha
Helix 10
AB1
A
605 627Right-handed alpha
Helix 11
AB2
A
633 656Right-handed alpha
Helix 12
AB3
A
661 693Right-handed alpha
Helix 13
AB4
A
697 724Right-handed alpha
Helix 14
AB5
A
725 727Right-handed 310
Helix 15
AB6
A
729 756Right-handed alpha
Helix 16
AB7
A
760 787Right-handed alpha
Helix 17
AB8
A
798 815Right-handed alpha
Helix 18
AB9
A
818 847Right-handed alpha
Helix 19
AC1
A
849 880Right-handed alpha
Helix 20
AC2
A
883 904Right-handed alpha
Helix 21
AC3
A
907 930Right-handed alpha
Helix 22
AC4
A
931 940Right-handed alpha
Helix 23
AC5
A
948 976Right-handed alpha
Helix 24
AC6
A
979 1005Right-handed alpha
Helix 25
AC7
A
1013 1045Right-handed alpha
Helix 26
AC8
A
1051 1074Right-handed alpha
Helix 27
AC9
A
1083 1112Right-handed alpha
Helix 28
AD1
A
1115 1142Right-handed alpha
Helix 29
AD2
A
1144 1174Right-handed alpha
Helix 30
AD3
A
1178 1203Right-handed alpha
Helix 31
AD4
A
1208 1225Right-handed alpha
Helix 32
AD5
A
1234 1245Right-handed alpha
Helix 33
AD6
A
1245 1260Right-handed alpha
Helix 34
AD7
A
1263 1288Right-handed alpha
Helix 35
AD8
A
1295 1323Right-handed alpha
Helix 36
AD9
A
1328 1353Right-handed alpha
Helix 37
AE1
A
1360 1377Right-handed alpha
Helix 38
AE2
A
1388 1417Right-handed alpha
Helix 39
AE3
A
1418 1451Right-handed alpha
Helix 40
AE4
A
1463 1483Right-handed alpha
Helix 41
AE5
A
1487 1514Right-handed alpha
Helix 42
AE6
A
1518 1546Right-handed alpha
Helix 43
AE7
A
1551 1577Right-handed alpha
Helix 44
AE8
A
1578 1582Right-handed 310
Helix 45
AE9
A
1589 1623Right-handed alpha
Helix 46
AF1
A
1626 1655Right-handed alpha
Helix 47
AF2
A
1659 1684Right-handed alpha
Helix 48
AF3
A
1694 1720Right-handed alpha
Helix 49
AF4
A
1723 1736Right-handed alpha
Helix 50
AF5
A
1737 1752Right-handed alpha
Helix 51
AF6
A
1754 1783Right-handed alpha
Helix 52
AF7
A
1789 1821Right-handed alpha
Helix 53
AF8
A
1826 1835Right-handed alpha
Helix 54
AF9
A
1850 1878Right-handed alpha
Helix 55
AG1
A
1881 1899Right-handed alpha
Helix 56
AG2
A
1899 1907Right-handed alpha
Helix 57
AG3
A
1909 1939Right-handed alpha
Helix 58
AG4
A
1945 1969Right-handed alpha
Helix 59
AG5
A
1975 2002Right-handed alpha
Helix 60
AG6
A
2012 2036Right-handed alpha
Helix 61
AG7
A
2040 2068Right-handed alpha
Helix 62
AG8
A
2073 2101Right-handed alpha
Helix 63
AG9
A
2108 2136Right-handed alpha
Back to top of page

There are 2 sheets in PDB entry 8VDR. Click on sheet of interest to get list of strands forming it: AA1, AA2,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
311 317first strand
Strand 2
A
326 332anti-parallel
Strand 3
A
336 340anti-parallel
Strand 4
A
347 352anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
365 368first strand
Strand 2
A
378 381anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il