Analysis of interatomic Contacts of Structural Units in PDB entry:
8VDW


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8VDW entry

There are 2 chains in PDB entry 8VDW (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLY 13ASN 338
B
 GLN 8THR 339
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 29 helices in PDB entry 8VDW. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
15 27Right-handed alpha
Helix 2
AA2
A
32 41Right-handed alpha
Helix 3
AA3
A
42 45Right-handed 310
Helix 4
AA4
A
46 62Right-handed alpha
Helix 5
AA5
A
103 117Right-handed alpha
Helix 6
AA6
A
133 150Right-handed alpha
Helix 7
AA7
A
163 174Right-handed alpha
Helix 8
AA8
A
185 192Right-handed 310
Helix 9
AA9
A
197 211Right-handed alpha
Helix 10
AB1
A
226 240Right-handed alpha
Helix 11
AB2
A
265 280Right-handed alpha
Helix 12
AB3
A
290 296Right-handed alpha
Helix 13
AB4
A
297 302Right-handed 310
Helix 14
AB5
A
322 333Right-handed alpha
Helix 15
AB6
B
15 27Right-handed alpha
Helix 16
AB7
B
32 41Right-handed alpha
Helix 17
AB8
B
42 45Right-handed 310
Helix 18
AB9
B
46 62Right-handed alpha
Helix 19
AC1
B
103 117Right-handed alpha
Helix 20
AC2
B
133 151Right-handed alpha
Helix 21
AC3
B
163 174Right-handed alpha
Helix 22
AC4
B
185 192Right-handed 310
Helix 23
AC5
B
197 211Right-handed alpha
Helix 24
AC6
B
226 240Right-handed alpha
Helix 25
AC7
B
256 261Right-handed 310
Helix 26
AC8
B
265 280Right-handed alpha
Helix 27
AC9
B
290 296Right-handed alpha
Helix 28
AD1
B
297 305Right-handed 310
Helix 29
AD2
B
322 333Right-handed alpha
Back to top of page

There are 4 sheets in PDB entry 8VDW. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 9 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
214 216first strand
Strand 2
A
177 179parallel
Strand 3
A
154 158parallel
Strand 4
A
121 126parallel
Strand 5
A
65 75parallel
Strand 6
A
309 311parallel
Strand 7
A
284 287parallel
Strand 8
A
244 249parallel
Strand 9
A
219 221parallel
Back to list of sheets
Back to top of page

There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
214 216first strand
Strand 2
A
177 179parallel
Strand 3
A
154 158parallel
Strand 4
A
121 126parallel
Strand 5
A
65 75parallel
Strand 6
A
336 337parallel
Back to list of sheets
Back to top of page

There are 9 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
215 216first strand
Strand 2
B
177 179parallel
Strand 3
B
154 158parallel
Strand 4
B
121 126parallel
Strand 5
B
65 75parallel
Strand 6
B
309 311parallel
Strand 7
B
284 287parallel
Strand 8
B
244 249parallel
Strand 9
B
219 221parallel
Back to list of sheets
Back to top of page

There are 6 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
215 216first strand
Strand 2
B
177 179parallel
Strand 3
B
154 158parallel
Strand 4
B
121 126parallel
Strand 5
B
65 75parallel
Strand 6
B
336 337parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il