Analysis of interatomic Contacts of Structural Units in PDB entry:
8VE6


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8VE6 entry

There are 4 chains in PDB entry 8VE6 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 LYS 9PRO 125
B
 LYS 9PRO 125
C
 CYS 10PRO 125
D
 LYS 9THR 123
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 4 helices in PDB entry 8VE6. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
74 82Right-handed alpha
Helix 2
AA2
B
75 81Right-handed alpha
Helix 3
AA3
C
75 82Right-handed alpha
Helix 4
AA4
D
75 83Right-handed alpha
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There are 5 sheets in PDB entry 8VE6. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
17 18first strand
Strand 2
A
110 112parallel
Strand 3
A
115 122anti-parallel
Strand 4
A
105 107anti-parallel
Strand 5
A
12 15parallel
Strand 6
A
54 56anti-parallel
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There are 7 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
17 18first strand
Strand 2
A
110 112parallel
Strand 3
A
115 122anti-parallel
Strand 4
B
115 123anti-parallel
Strand 5
B
104 112anti-parallel
Strand 6
B
12 18parallel
Strand 7
B
54 55anti-parallel
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There are 8 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
42 48first strand
Strand 2
A
29 34anti-parallel
Strand 3
A
68 73anti-parallel
Strand 4
A
88 96anti-parallel
Strand 5
B
88 97anti-parallel
Strand 6
B
67 74anti-parallel
Strand 7
B
29 34anti-parallel
Strand 8
B
45 48anti-parallel
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There are 7 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
23 24first strand
Strand 2
C
17 18anti-parallel
Strand 3
C
106 112parallel
Strand 4
C
115 121anti-parallel
Strand 5
D
115 121anti-parallel
Strand 6
D
105 112anti-parallel
Strand 7
D
12 18parallel
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There are 8 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
41 47first strand
Strand 2
C
30 35anti-parallel
Strand 3
C
69 74anti-parallel
Strand 4
C
88 95anti-parallel
Strand 5
D
88 97anti-parallel
Strand 6
D
67 74anti-parallel
Strand 7
D
30 34anti-parallel
Strand 8
D
45 47anti-parallel
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