Analysis of interatomic Contacts of Structural Units in PDB entry:
8VED


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8VED entry

There are 9 chains in PDB entry 8VED (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ASP 11ILE 1173
H
 GLN 1SER 112
L
 ASP 1LYS 107
C
 ASP 11ILE 1173
G
 GLN 1SER 112
I
 ASP 1LYS 107
E
 ASP 11ILE 1173
J
 GLN 1SER 112
K
 ASP 1LYS 107
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 33 helices in PDB entry 8VED. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
66 73Right-handed alpha
Helix 2
AA2
A
107 117Right-handed alpha
Helix 3
AA3
A
193 202Right-handed alpha
Helix 4
AA4
A
1037 1059Right-handed alpha
Helix 5
AA5
A
1074 1127Right-handed alpha
Helix 6
AA6
A
1145 1154Right-handed alpha
Helix 7
AA7
A
1159 1161Right-handed 310
Helix 8
AA8
A
1162 1173Right-handed alpha
Helix 9
AA9
H
83 87Right-handed 310
Helix 10
AB1
H
100 100Right-handed 310
Helix 11
AB2
L
79 83Right-handed 310
Helix 12
AB3
C
66 73Right-handed alpha
Helix 13
AB4
C
107 117Right-handed alpha
Helix 14
AB5
C
193 202Right-handed alpha
Helix 15
AB6
C
1039 1059Right-handed alpha
Helix 16
AB7
C
1074 1127Right-handed alpha
Helix 17
AB8
C
1145 1154Right-handed alpha
Helix 18
AB9
C
1162 1173Right-handed alpha
Helix 19
AC1
G
83 87Right-handed 310
Helix 20
AC2
G
100 100Right-handed 310
Helix 21
AC3
I
79 83Right-handed 310
Helix 22
AC4
E
66 73Right-handed alpha
Helix 23
AC5
E
107 117Right-handed alpha
Helix 24
AC6
E
128 133Right-handed alpha
Helix 25
AC7
E
193 202Right-handed alpha
Helix 26
AC8
E
1037 1059Right-handed alpha
Helix 27
AC9
E
1074 1127Right-handed alpha
Helix 28
AD1
E
1145 1154Right-handed alpha
Helix 29
AD2
E
1159 1161Right-handed 310
Helix 30
AD3
E
1162 1173Right-handed alpha
Helix 31
AD4
J
83 87Right-handed 310
Helix 32
AD5
J
100 100Right-handed 310
Helix 33
AD6
K
79 83Right-handed 310
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There are 43 sheets in PDB entry 8VED. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1, AD2, AD3, AD4, AD5, AD6, AD7, AD8, AD9, AE1, AE2, AE3, AE4, AE5, AE6, AE7,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1032 1036first strand
Strand 2
A
1022 1027anti-parallel
Strand 3
A
12 17anti-parallel
Strand 4
A
1137 1140anti-parallel
Strand 5
A
1130 1132anti-parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
24 26first strand
Strand 2
A
34 36anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
39 41first strand
Strand 2
A
322 324anti-parallel
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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
43 44first strand
Strand 2
A
301 302parallel
Strand 3
A
314 315parallel
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There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
60 61first strand
Strand 2
A
89 91parallel
Strand 3
A
274 276parallel
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There are 5 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
84 85first strand
Strand 2
A
118 125anti-parallel
Strand 3
A
262 268anti-parallel
Strand 4
A
181 190anti-parallel
Strand 5
A
235 243anti-parallel
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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
157 159first strand
Strand 2
A
258 260anti-parallel
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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
170 175first strand
Strand 2
A
248 253anti-parallel
Strand 3
A
208 212anti-parallel
Strand 4
A
216 219anti-parallel
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There are 3 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
293 294first strand
Strand 2
A
288 290anti-parallel
Strand 3
A
309 310anti-parallel
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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
H
3 7first strand
Strand 2
H
18 25anti-parallel
Strand 3
H
77 82anti-parallel
Strand 4
H
67 72anti-parallel
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There are 6 strands in AB2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
H
11 12first strand
Strand 2
H
107 111parallel
Strand 3
H
88 96anti-parallel
Strand 4
H
32 39anti-parallel
Strand 5
H
46 51anti-parallel
Strand 6
H
57 59anti-parallel
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There are 4 strands in AB3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
L
4 7first strand
Strand 2
L
19 25anti-parallel
Strand 3
L
70 75anti-parallel
Strand 4
L
62 67anti-parallel
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There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
L
13 14first strand
Strand 2
L
106 107parallel
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There are 4 strands in AB5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
L
45 48first strand
Strand 2
L
33 38anti-parallel
Strand 3
L
84 90anti-parallel
Strand 4
L
97 98anti-parallel
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There are 4 strands in AB6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
L
45 48first strand
Strand 2
L
33 38anti-parallel
Strand 3
L
84 90anti-parallel
Strand 4
L
102 104anti-parallel
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There are 5 strands in AB7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
1032 1034first strand
Strand 2
C
1022 1027anti-parallel
Strand 3
C
12 17anti-parallel
Strand 4
C
1137 1140anti-parallel
Strand 5
C
1130 1132anti-parallel
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There are 2 strands in AB8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
24 26first strand
Strand 2
C
34 36anti-parallel
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There are 2 strands in AB9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
39 41first strand
Strand 2
C
322 324anti-parallel
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There are 3 strands in AC1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
43 44first strand
Strand 2
C
301 302parallel
Strand 3
C
314 315parallel
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There are 3 strands in AC2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
60 61first strand
Strand 2
C
89 91parallel
Strand 3
C
274 276parallel
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There are 5 strands in AC3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
118 125first strand
Strand 2
C
262 268anti-parallel
Strand 3
C
181 190anti-parallel
Strand 4
C
257 260anti-parallel
Strand 5
C
157 159anti-parallel
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There are 4 strands in AC4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
118 125first strand
Strand 2
C
262 268anti-parallel
Strand 3
C
181 190anti-parallel
Strand 4
C
235 243anti-parallel
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There are 4 strands in AC5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
170 175first strand
Strand 2
C
248 253anti-parallel
Strand 3
C
208 211anti-parallel
Strand 4
C
216 219anti-parallel
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There are 2 strands in AC6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
288 289first strand
Strand 2
C
309 310anti-parallel
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There are 4 strands in AC7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
G
3 7first strand
Strand 2
G
18 25anti-parallel
Strand 3
G
77 82anti-parallel
Strand 4
G
67 72anti-parallel
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There are 5 strands in AC8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
G
11 12first strand
Strand 2
G
107 111parallel
Strand 3
G
88 96anti-parallel
Strand 4
G
32 39anti-parallel
Strand 5
G
46 51anti-parallel
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There are 4 strands in AC9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
I
4 7first strand
Strand 2
I
19 25anti-parallel
Strand 3
I
70 75anti-parallel
Strand 4
I
62 67anti-parallel
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There are 5 strands in AD1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
I
10 14first strand
Strand 2
I
102 107parallel
Strand 3
I
84 90anti-parallel
Strand 4
I
33 38anti-parallel
Strand 5
I
45 49anti-parallel
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There are 4 strands in AD2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
I
10 14first strand
Strand 2
I
102 107parallel
Strand 3
I
84 90anti-parallel
Strand 4
I
97 98anti-parallel
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There are 5 strands in AD3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
1032 1036first strand
Strand 2
E
1022 1027anti-parallel
Strand 3
E
12 17anti-parallel
Strand 4
E
1137 1140anti-parallel
Strand 5
E
1130 1132anti-parallel
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There are 2 strands in AD4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
24 26first strand
Strand 2
E
34 36anti-parallel
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There are 2 strands in AD5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
39 41first strand
Strand 2
E
322 324anti-parallel
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There are 3 strands in AD6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
43 44first strand
Strand 2
E
301 302parallel
Strand 3
E
314 315parallel
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There are 3 strands in AD7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
60 61first strand
Strand 2
E
89 91parallel
Strand 3
E
274 276parallel
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There are 6 strands in AD8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
84 85first strand
Strand 2
E
118 125anti-parallel
Strand 3
E
262 268anti-parallel
Strand 4
E
182 190anti-parallel
Strand 5
E
257 260anti-parallel
Strand 6
E
157 159anti-parallel
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There are 5 strands in AD9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
84 85first strand
Strand 2
E
118 125anti-parallel
Strand 3
E
262 268anti-parallel
Strand 4
E
182 190anti-parallel
Strand 5
E
235 243anti-parallel
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There are 4 strands in AE1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
170 175first strand
Strand 2
E
248 253anti-parallel
Strand 3
E
208 212anti-parallel
Strand 4
E
216 219anti-parallel
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There are 3 strands in AE2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
294 295first strand
Strand 2
E
288 289anti-parallel
Strand 3
E
309 310anti-parallel
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There are 4 strands in AE3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
J
3 7first strand
Strand 2
J
18 25anti-parallel
Strand 3
J
77 82anti-parallel
Strand 4
J
67 72anti-parallel
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There are 6 strands in AE4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
J
11 12first strand
Strand 2
J
107 111parallel
Strand 3
J
88 96anti-parallel
Strand 4
J
32 39anti-parallel
Strand 5
J
46 51anti-parallel
Strand 6
J
57 59anti-parallel
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There are 4 strands in AE5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
K
4 7first strand
Strand 2
K
19 25anti-parallel
Strand 3
K
70 75anti-parallel
Strand 4
K
62 67anti-parallel
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There are 5 strands in AE6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
K
10 14first strand
Strand 2
K
102 107parallel
Strand 3
K
84 90anti-parallel
Strand 4
K
33 38anti-parallel
Strand 5
K
45 49anti-parallel
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There are 4 strands in AE7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
K
10 14first strand
Strand 2
K
102 107parallel
Strand 3
K
84 90anti-parallel
Strand 4
K
97 98anti-parallel
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