Analysis of interatomic Contacts of Structural Units in PDB entry:
8VEH

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8VEH entry

There are 4 chains in PDB entry 8VEH (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	ASP 23	SER 212
B	MET 20	SER 212
C	SER 22	SER 214
D	ASP 23	SER 212

There are 26 helices in PDB entry 8VEH. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	25	38	Right-handed alpha
Helix 2	AA2	A	100	104	Right-handed 310
Helix 3	AA3	A	106	111	Right-handed alpha
Helix 4	AA4	A	112	119	Right-handed alpha
Helix 5	AA5	A	183	187	Right-handed 310
Helix 6	AA6	A	190	195	Right-handed alpha
Helix 7	AA7	A	201	207	Right-handed alpha
Helix 8	AA8	B	21	38	Right-handed alpha
Helix 9	AA9	B	106	111	Right-handed alpha
Helix 10	AB1	B	112	119	Right-handed alpha
Helix 11	AB2	B	183	187	Right-handed 310
Helix 12	AB3	B	190	195	Right-handed alpha
Helix 13	AB4	B	201	207	Right-handed alpha
Helix 14	AB5	C	23	37	Right-handed alpha
Helix 15	AB6	C	106	111	Right-handed alpha
Helix 16	AB7	C	112	114	Right-handed 310
Helix 17	AB8	C	115	119	Right-handed alpha
Helix 18	AB9	C	183	187	Right-handed 310
Helix 19	AC1	C	190	195	Right-handed alpha
Helix 20	AC2	C	201	207	Right-handed alpha
Helix 21	AC3	D	24	38	Right-handed alpha
Helix 22	AC4	D	107	111	Right-handed 310
Helix 23	AC5	D	112	119	Right-handed alpha
Helix 24	AC6	D	183	187	Right-handed 310
Helix 25	AC7	D	190	195	Right-handed alpha
Helix 26	AC8	D	201	207	Right-handed alpha

There are 8 sheets in PDB entry 8VEH. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8,

There are 11 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	95	98	first strand
Strand 2	A	86	90	anti-parallel
Strand 3	A	78	81	anti-parallel
Strand 4	A	66	71	anti-parallel
Strand 5	A	54	62	anti-parallel
Strand 6	A	40	48	anti-parallel
Strand 7	A	166	181	anti-parallel
Strand 8	A	155	163	anti-parallel
Strand 9	A	144	150	anti-parallel
Strand 10	A	131	138	anti-parallel
Strand 11	A	120	128	anti-parallel

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There are 8 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	95	98	first strand
Strand 2	A	86	90	anti-parallel
Strand 3	A	78	81	anti-parallel
Strand 4	A	66	71	anti-parallel
Strand 5	A	54	62	anti-parallel
Strand 6	A	40	48	anti-parallel
Strand 7	A	166	181	anti-parallel
Strand 8	A	209	211	anti-parallel

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There are 11 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	95	98	first strand
Strand 2	B	86	90	anti-parallel
Strand 3	B	77	81	anti-parallel
Strand 4	B	66	71	anti-parallel
Strand 5	B	54	62	anti-parallel
Strand 6	B	40	48	anti-parallel
Strand 7	B	166	181	anti-parallel
Strand 8	B	155	163	anti-parallel
Strand 9	B	144	150	anti-parallel
Strand 10	B	131	138	anti-parallel
Strand 11	B	120	128	anti-parallel

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There are 8 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	95	98	first strand
Strand 2	B	86	90	anti-parallel
Strand 3	B	77	81	anti-parallel
Strand 4	B	66	71	anti-parallel
Strand 5	B	54	62	anti-parallel
Strand 6	B	40	48	anti-parallel
Strand 7	B	166	181	anti-parallel
Strand 8	B	209	211	anti-parallel

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There are 11 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	95	98	first strand
Strand 2	C	86	90	anti-parallel
Strand 3	C	78	81	anti-parallel
Strand 4	C	66	71	anti-parallel
Strand 5	C	54	62	anti-parallel
Strand 6	C	40	48	anti-parallel
Strand 7	C	166	181	anti-parallel
Strand 8	C	155	163	anti-parallel
Strand 9	C	144	150	anti-parallel
Strand 10	C	131	138	anti-parallel
Strand 11	C	120	128	anti-parallel

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There are 8 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	95	98	first strand
Strand 2	C	86	90	anti-parallel
Strand 3	C	78	81	anti-parallel
Strand 4	C	66	71	anti-parallel
Strand 5	C	54	62	anti-parallel
Strand 6	C	40	48	anti-parallel
Strand 7	C	166	181	anti-parallel
Strand 8	C	209	211	anti-parallel

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There are 11 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	95	100	first strand
Strand 2	D	85	90	anti-parallel
Strand 3	D	77	81	anti-parallel
Strand 4	D	66	71	anti-parallel
Strand 5	D	54	62	anti-parallel
Strand 6	D	40	49	anti-parallel
Strand 7	D	166	181	anti-parallel
Strand 8	D	155	163	anti-parallel
Strand 9	D	144	150	anti-parallel
Strand 10	D	131	138	anti-parallel
Strand 11	D	120	128	anti-parallel

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There are 8 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	95	100	first strand
Strand 2	D	85	90	anti-parallel
Strand 3	D	77	81	anti-parallel
Strand 4	D	66	71	anti-parallel
Strand 5	D	54	62	anti-parallel
Strand 6	D	40	49	anti-parallel
Strand 7	D	166	181	anti-parallel
Strand 8	D	209	211	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8VEH

Analysis of interatomic Contacts of Structural Units in PDB entry:
8VEH