Analysis of interatomic Contacts of Structural Units in PDB entry:
8VES

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8VES entry

There are 7 chains in PDB entry 8VES (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	MET 1	GLU 287
C	MET 1	GLU 287
B	MET 1	GLU 287
E	MET 1	GLU 287
D	MET 1	GLU 287
F	MET 1	GLU 287
H	G 1	A 22

There are 58 helices in PDB entry 8VES. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	39	44	Right-handed 310
Helix 2	AA2	A	45	57	Right-handed alpha
Helix 3	AA3	A	81	100	Right-handed alpha
Helix 4	AA4	A	105	112	Right-handed alpha
Helix 5	AA5	A	124	190	Right-handed alpha
Helix 6	AA6	A	199	212	Right-handed alpha
Helix 7	AA7	A	214	232	Right-handed alpha
Helix 8	AA8	A	238	260	Right-handed alpha
Helix 9	AA9	A	262	284	Right-handed alpha
Helix 10	AB1	C	42	44	Right-handed 310
Helix 11	AB2	C	45	57	Right-handed alpha
Helix 12	AB3	C	81	100	Right-handed alpha
Helix 13	AB4	C	105	111	Right-handed alpha
Helix 14	AB5	C	122	172	Right-handed alpha
Helix 15	AB6	C	173	195	Right-handed alpha
Helix 16	AB7	C	200	211	Right-handed alpha
Helix 17	AB8	C	213	232	Right-handed alpha
Helix 18	AB9	C	238	258	Right-handed alpha
Helix 19	AC1	C	262	285	Right-handed alpha
Helix 20	AC2	B	42	44	Right-handed 310
Helix 21	AC3	B	45	57	Right-handed alpha
Helix 22	AC4	B	81	100	Right-handed alpha
Helix 23	AC5	B	105	112	Right-handed alpha
Helix 24	AC6	B	123	192	Right-handed alpha
Helix 25	AC7	B	197	213	Right-handed alpha
Helix 26	AC8	B	214	234	Right-handed alpha
Helix 27	AC9	B	239	260	Right-handed alpha
Helix 28	AD1	B	262	284	Right-handed alpha
Helix 29	AD2	E	39	44	Right-handed 310
Helix 30	AD3	E	45	57	Right-handed alpha
Helix 31	AD4	E	81	100	Right-handed alpha
Helix 32	AD5	E	105	111	Right-handed alpha
Helix 33	AD6	E	124	174	Right-handed alpha
Helix 34	AD7	E	176	193	Right-handed alpha
Helix 35	AD8	E	197	208	Right-handed alpha
Helix 36	AD9	E	208	213	Right-handed alpha
Helix 37	AE1	E	214	232	Right-handed alpha
Helix 38	AE2	E	238	260	Right-handed alpha
Helix 39	AE3	E	262	284	Right-handed alpha
Helix 40	AE4	D	42	44	Right-handed 310
Helix 41	AE5	D	45	55	Right-handed alpha
Helix 42	AE6	D	81	100	Right-handed alpha
Helix 43	AE7	D	105	112	Right-handed alpha
Helix 44	AE8	D	122	192	Right-handed alpha
Helix 45	AE9	D	199	212	Right-handed alpha
Helix 46	AF1	D	214	232	Right-handed alpha
Helix 47	AF2	D	238	260	Right-handed alpha
Helix 48	AF3	D	262	284	Right-handed alpha
Helix 49	AF4	F	39	44	Right-handed 310
Helix 50	AF5	F	45	55	Right-handed alpha
Helix 51	AF6	F	81	100	Right-handed alpha
Helix 52	AF7	F	105	111	Right-handed alpha
Helix 53	AF8	F	124	172	Right-handed alpha
Helix 54	AF9	F	173	192	Right-handed alpha
Helix 55	AG1	F	202	211	Right-handed alpha
Helix 56	AG2	F	213	233	Right-handed alpha
Helix 57	AG3	F	238	259	Right-handed alpha
Helix 58	AG4	F	262	284	Right-handed alpha

There are 8 sheets in PDB entry 8VES. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	7	15	first strand
Strand 2	A	18	27	anti-parallel
Strand 3	A	60	70	anti-parallel
Strand 4	A	32	36	parallel

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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	8	15	first strand
Strand 2	C	18	27	anti-parallel
Strand 3	C	60	70	anti-parallel
Strand 4	C	32	37	parallel

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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	8	14	first strand
Strand 2	B	18	27	anti-parallel
Strand 3	B	60	70	anti-parallel
Strand 4	B	32	37	parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	78	80	first strand
Strand 2	B	116	118	anti-parallel

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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	7	15	first strand
Strand 2	E	18	26	anti-parallel
Strand 3	E	63	70	anti-parallel
Strand 4	E	35	37	parallel

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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	8	14	first strand
Strand 2	D	19	25	anti-parallel
Strand 3	D	60	69	anti-parallel
Strand 4	D	32	37	parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	79	80	first strand
Strand 2	D	116	117	anti-parallel

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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	7	14	first strand
Strand 2	F	18	27	anti-parallel
Strand 3	F	60	70	anti-parallel
Strand 4	F	32	37	parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8VES

Analysis of interatomic Contacts of Structural Units in PDB entry:
8VES