Analysis of interatomic Contacts of Structural Units in PDB entry:
8VEV

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8VEV entry

There are 4 chains in PDB entry 8VEV (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	GLU 1	ARG 218
B	GLN 1	ASP 213
C	GLU 1	ARG 218
D	GLN 1	ARG 23

There are 21 helices in PDB entry 8VEV. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	76	78	Right-handed 310
Helix 2	AA2	A	89	93	Right-handed 310
Helix 3	AA3	A	132	136	Right-handed 310
Helix 4	AA4	A	161	163	Right-handed 310
Helix 5	AA5	A	205	207	Right-handed 310
Helix 6	AA6	B	30	34	Right-handed 310
Helix 7	AA7	B	81	85	Right-handed 310
Helix 8	AA8	B	124	129	Right-handed alpha
Helix 9	AA9	B	185	190	Right-handed alpha
Helix 10	AB1	C	76	78	Right-handed 310
Helix 11	AB2	C	89	93	Right-handed 310
Helix 12	AB3	C	161	163	Right-handed 310
Helix 13	AB4	D	30	34	Right-handed 310
Helix 14	AB5	D	81	85	Right-handed 310
Helix 15	AB6	D	124	129	Right-handed alpha
Helix 16	AB7	H	89	93	Right-handed 310
Helix 17	AB8	H	205	208	Right-handed 310
Helix 18	AB9	L	30	34	Right-handed 310
Helix 19	AC1	L	81	85	Right-handed 310
Helix 20	AC2	L	124	129	Right-handed alpha
Helix 21	AC3	L	184	191	Right-handed alpha

There are 34 sheets in PDB entry 8VEV. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1, AD2, AD3, AD4, AD5, AD6, AD7,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	3	7	first strand
Strand 2	A	18	25	anti-parallel
Strand 3	A	80	85	anti-parallel
Strand 4	A	71	75	anti-parallel

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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	11	12	first strand
Strand 2	A	112	116	parallel
Strand 3	A	94	101	anti-parallel
Strand 4	A	33	40	anti-parallel
Strand 5	A	44	52	anti-parallel
Strand 6	A	60	62	anti-parallel

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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	11	12	first strand
Strand 2	A	112	116	parallel
Strand 3	A	94	101	anti-parallel
Strand 4	A	105	108	anti-parallel

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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	125	129	first strand
Strand 2	A	140	150	anti-parallel
Strand 3	A	179	189	anti-parallel
Strand 4	A	168	170	anti-parallel

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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	125	129	first strand
Strand 2	A	140	150	anti-parallel
Strand 3	A	179	189	anti-parallel
Strand 4	A	174	176	anti-parallel

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There are 6 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	156	159	first strand
Strand 2	A	199	204	anti-parallel
Strand 3	A	209	214	anti-parallel
Strand 4	C	209	214	anti-parallel
Strand 5	C	199	204	anti-parallel
Strand 6	C	156	159	anti-parallel

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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	4	5	first strand
Strand 2	B	18	24	anti-parallel
Strand 3	B	72	77	anti-parallel
Strand 4	B	64	69	anti-parallel

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There are 6 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	9	12	first strand
Strand 2	B	104	108	parallel
Strand 3	B	86	93	anti-parallel
Strand 4	B	36	41	anti-parallel
Strand 5	B	45	51	anti-parallel
Strand 6	B	55	56	anti-parallel

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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	9	12	first strand
Strand 2	B	104	108	parallel
Strand 3	B	86	93	anti-parallel
Strand 4	B	98	100	anti-parallel

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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	117	121	first strand
Strand 2	B	132	142	anti-parallel
Strand 3	B	175	184	anti-parallel
Strand 4	B	162	164	anti-parallel

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There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	117	121	first strand
Strand 2	B	132	142	anti-parallel
Strand 3	B	175	184	anti-parallel
Strand 4	B	168	169	anti-parallel

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There are 4 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	156	157	first strand
Strand 2	B	148	153	anti-parallel
Strand 3	B	193	200	anti-parallel
Strand 4	B	203	210	anti-parallel

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There are 4 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	3	7	first strand
Strand 2	C	18	25	anti-parallel
Strand 3	C	80	85	anti-parallel
Strand 4	C	70	75	anti-parallel

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There are 6 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	10	12	first strand
Strand 2	C	112	116	parallel
Strand 3	C	94	101	anti-parallel
Strand 4	C	33	40	anti-parallel
Strand 5	C	44	52	anti-parallel
Strand 6	C	60	62	anti-parallel

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There are 4 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	10	12	first strand
Strand 2	C	112	116	parallel
Strand 3	C	94	101	anti-parallel
Strand 4	C	105	108	anti-parallel

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There are 4 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	125	129	first strand
Strand 2	C	140	150	anti-parallel
Strand 3	C	179	189	anti-parallel
Strand 4	C	169	170	anti-parallel

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There are 4 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	125	129	first strand
Strand 2	C	140	150	anti-parallel
Strand 3	C	179	189	anti-parallel
Strand 4	C	174	176	anti-parallel

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There are 4 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	4	6	first strand
Strand 2	D	17	24	anti-parallel
Strand 3	D	72	78	anti-parallel
Strand 4	D	64	69	anti-parallel

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There are 6 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	9	12	first strand
Strand 2	D	104	108	parallel
Strand 3	D	87	93	anti-parallel
Strand 4	D	36	41	anti-parallel
Strand 5	D	45	51	anti-parallel
Strand 6	D	55	56	anti-parallel

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There are 4 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	9	12	first strand
Strand 2	D	104	108	parallel
Strand 3	D	87	93	anti-parallel
Strand 4	D	98	100	anti-parallel

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There are 4 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	117	121	first strand
Strand 2	D	134	142	anti-parallel
Strand 3	D	175	182	anti-parallel
Strand 4	D	163	164	anti-parallel

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There are 3 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	148	153	first strand
Strand 2	D	194	200	anti-parallel
Strand 3	D	203	209	anti-parallel

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There are 4 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	3	7	first strand
Strand 2	H	18	25	anti-parallel
Strand 3	H	80	85	anti-parallel
Strand 4	H	70	75	anti-parallel

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There are 6 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	10	12	first strand
Strand 2	H	112	116	parallel
Strand 3	H	94	101	anti-parallel
Strand 4	H	32	39	anti-parallel
Strand 5	H	45	53	anti-parallel
Strand 6	H	60	62	anti-parallel

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There are 4 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	10	12	first strand
Strand 2	H	112	116	parallel
Strand 3	H	94	101	anti-parallel
Strand 4	H	105	108	anti-parallel

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There are 4 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	125	129	first strand
Strand 2	H	140	150	anti-parallel
Strand 3	H	179	189	anti-parallel
Strand 4	H	169	170	anti-parallel

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There are 4 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	125	129	first strand
Strand 2	H	140	150	anti-parallel
Strand 3	H	179	189	anti-parallel
Strand 4	H	174	176	anti-parallel

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There are 3 strands in AD1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	156	159	first strand
Strand 2	H	199	204	anti-parallel
Strand 3	H	209	214	anti-parallel

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There are 4 strands in AD2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	4	6	first strand
Strand 2	L	17	24	anti-parallel
Strand 3	L	72	78	anti-parallel
Strand 4	L	64	69	anti-parallel

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There are 6 strands in AD3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	9	12	first strand
Strand 2	L	104	108	parallel
Strand 3	L	86	93	anti-parallel
Strand 4	L	36	41	anti-parallel
Strand 5	L	45	51	anti-parallel
Strand 6	L	55	56	anti-parallel

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There are 4 strands in AD4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	9	12	first strand
Strand 2	L	104	108	parallel
Strand 3	L	86	93	anti-parallel
Strand 4	L	98	100	anti-parallel

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There are 4 strands in AD5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	117	121	first strand
Strand 2	L	133	142	anti-parallel
Strand 3	L	175	183	anti-parallel
Strand 4	L	162	164	anti-parallel

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There are 4 strands in AD6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	117	121	first strand
Strand 2	L	133	142	anti-parallel
Strand 3	L	175	183	anti-parallel
Strand 4	L	168	169	anti-parallel

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There are 4 strands in AD7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	156	157	first strand
Strand 2	L	148	153	anti-parallel
Strand 3	L	193	200	anti-parallel
Strand 4	L	203	210	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8VEV

Analysis of interatomic Contacts of Structural Units in PDB entry:
8VEV