Analysis of interatomic Contacts of Structural Units in PDB entry:
8VF1

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8VF1 entry

There are 2 chains in PDB entry 8VF1 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	ASN 186	GLU 603
B	PRO 185	HIS 406

There are 9 helices in PDB entry 8VF1. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	275	277	Right-handed 310
Helix 2	AA2	A	373	375	Right-handed 310
Helix 3	AA3	A	378	382	Right-handed 310
Helix 4	AA4	A	393	398	Right-handed alpha
Helix 5	AA5	B	275	277	Right-handed 310
Helix 6	AA6	B	373	375	Right-handed 310
Helix 7	AA7	B	378	382	Right-handed 310
Helix 8	AA8	B	392	397	Right-handed alpha
Helix 9	AA9	B	419	421	Right-handed 310

There are 14 sheets in PDB entry 8VF1. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	201	202	first strand
Strand 2	A	591	596	anti-parallel
Strand 3	A	571	580	anti-parallel
Strand 4	A	558	568	anti-parallel

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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	264	271	first strand
Strand 2	A	244	256	anti-parallel
Strand 3	A	228	237	anti-parallel
Strand 4	A	215	222	anti-parallel
Strand 5	A	587	588	parallel

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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	279	287	first strand
Strand 2	A	290	297	anti-parallel
Strand 3	A	314	320	anti-parallel
Strand 4	A	332	335	anti-parallel

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There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	339	341	first strand
Strand 2	A	425	430	parallel
Strand 3	A	407	417	anti-parallel
Strand 4	A	361	371	anti-parallel
Strand 5	A	347	350	anti-parallel

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There are 5 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	339	341	first strand
Strand 2	A	425	430	parallel
Strand 3	A	407	417	anti-parallel
Strand 4	A	361	371	anti-parallel
Strand 5	A	356	358	anti-parallel

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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	442	447	first strand
Strand 2	A	450	455	anti-parallel
Strand 3	A	465	471	anti-parallel
Strand 4	A	476	479	anti-parallel

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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	511	515	first strand
Strand 2	A	520	526	anti-parallel
Strand 3	A	535	541	anti-parallel
Strand 4	A	544	550	anti-parallel

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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	201	202	first strand
Strand 2	B	591	596	anti-parallel
Strand 3	B	571	580	anti-parallel
Strand 4	B	558	568	anti-parallel

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There are 6 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	204	205	first strand
Strand 2	B	264	271	parallel
Strand 3	B	244	256	anti-parallel
Strand 4	B	228	237	anti-parallel
Strand 5	B	215	225	anti-parallel
Strand 6	B	587	588	parallel

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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	279	287	first strand
Strand 2	B	290	297	anti-parallel
Strand 3	B	314	320	anti-parallel
Strand 4	B	332	334	anti-parallel

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There are 5 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	339	341	first strand
Strand 2	B	425	430	parallel
Strand 3	B	407	417	anti-parallel
Strand 4	B	361	371	anti-parallel
Strand 5	B	347	350	anti-parallel

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There are 5 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	339	341	first strand
Strand 2	B	425	430	parallel
Strand 3	B	407	417	anti-parallel
Strand 4	B	361	371	anti-parallel
Strand 5	B	356	358	anti-parallel

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There are 4 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	442	447	first strand
Strand 2	B	450	455	anti-parallel
Strand 3	B	465	471	anti-parallel
Strand 4	B	476	479	anti-parallel

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There are 4 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	511	515	first strand
Strand 2	B	520	526	anti-parallel
Strand 3	B	535	541	anti-parallel
Strand 4	B	544	550	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8VF1

Analysis of interatomic Contacts of Structural Units in PDB entry:
8VF1