Analysis of interatomic Contacts of Structural Units in PDB entry:
8VF2

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8VF2 entry

There are 10 chains in PDB entry 8VF2 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
I	C 1	C 22
J	G 59	G 80
A	MET 1	LYS 226
B	MET 1	LEU 227
C	MET 1	LYS 226
D	MET 1	LEU 227
E	MET 1	LYS 226
F	MET 1	LEU 227
G	C 1	G 37
H	C -3	G 33

There are 47 helices in PDB entry 8VF2. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	75	80	Right-handed alpha
Helix 2	AA2	A	81	82	Right-handed 310
Helix 3	AA3	A	83	87	Right-handed 310
Helix 4	AA4	A	119	133	Right-handed alpha
Helix 5	AA5	A	188	202	Right-handed alpha
Helix 6	AA6	A	207	211	Right-handed 310
Helix 7	AA7	A	213	226	Right-handed alpha
Helix 8	AA8	B	75	82	Right-handed alpha
Helix 9	AA9	B	83	87	Right-handed 310
Helix 10	AB1	B	97	101	Right-handed 310
Helix 11	AB2	B	115	117	Right-handed 310
Helix 12	AB3	B	118	133	Right-handed alpha
Helix 13	AB4	B	178	183	Right-handed alpha
Helix 14	AB5	B	188	201	Right-handed alpha
Helix 15	AB6	B	213	227	Right-handed alpha
Helix 16	AB7	C	75	80	Right-handed alpha
Helix 17	AB8	C	83	87	Right-handed 310
Helix 18	AB9	C	118	133	Right-handed alpha
Helix 19	AC1	C	169	173	Right-handed 310
Helix 20	AC2	C	178	183	Right-handed alpha
Helix 21	AC3	C	188	203	Right-handed alpha
Helix 22	AC4	C	207	211	Right-handed 310
Helix 23	AC5	C	213	226	Right-handed alpha
Helix 24	AC6	D	75	80	Right-handed alpha
Helix 25	AC7	D	82	86	Right-handed 310
Helix 26	AC8	D	99	101	Right-handed 310
Helix 27	AC9	D	115	117	Right-handed 310
Helix 28	AD1	D	118	133	Right-handed alpha
Helix 29	AD2	D	169	173	Right-handed 310
Helix 30	AD3	D	178	183	Right-handed alpha
Helix 31	AD4	D	188	201	Right-handed alpha
Helix 32	AD5	D	213	227	Right-handed alpha
Helix 33	AD6	E	56	60	Right-handed 310
Helix 34	AD7	E	75	80	Right-handed alpha
Helix 35	AD8	E	81	86	Right-handed 310
Helix 36	AD9	E	99	101	Right-handed 310
Helix 37	AE1	E	102	104	Right-handed 310
Helix 38	AE2	E	118	133	Right-handed alpha
Helix 39	AE3	E	169	173	Right-handed 310
Helix 40	AE4	E	178	183	Right-handed 310
Helix 41	AE5	E	188	201	Right-handed alpha
Helix 42	AE6	E	213	226	Right-handed alpha
Helix 43	AE7	F	75	81	Right-handed alpha
Helix 44	AE8	F	99	101	Right-handed 310
Helix 45	AE9	F	119	133	Right-handed alpha
Helix 46	AF1	F	188	202	Right-handed alpha
Helix 47	AF2	F	213	227	Right-handed alpha

There are 14 sheets in PDB entry 8VF2. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	14	17	first strand
Strand 2	A	8	11	anti-parallel
Strand 3	A	89	90	parallel

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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	21	22	first strand
Strand 2	A	109	111	anti-parallel
Strand 3	A	162	166	anti-parallel
Strand 4	A	149	153	anti-parallel
Strand 5	A	134	138	anti-parallel
Strand 6	A	92	97	anti-parallel

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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	32	35	first strand
Strand 2	B	60	64	anti-parallel
Strand 3	B	72	73	anti-parallel

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There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	42	48	first strand
Strand 2	B	40	48	anti-parallel
Strand 3	B	32	35	anti-parallel
Strand 4	A	61	65	anti-parallel
Strand 5	A	71	73	anti-parallel

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There are 7 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	7	9	first strand
Strand 2	B	16	22	anti-parallel
Strand 3	B	106	113	anti-parallel
Strand 4	B	160	167	anti-parallel
Strand 5	B	149	155	anti-parallel
Strand 6	B	135	138	anti-parallel
Strand 7	B	94	96	anti-parallel

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There are 8 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	5	9	first strand
Strand 2	C	17	22	anti-parallel
Strand 3	C	109	111	anti-parallel
Strand 4	C	160	166	anti-parallel
Strand 5	C	145	155	anti-parallel
Strand 6	C	134	142	anti-parallel
Strand 7	C	89	97	anti-parallel
Strand 8	C	5	9	parallel

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There are 3 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	40	41	first strand
Strand 2	C	33	35	anti-parallel
Strand 3	D	61	62	anti-parallel

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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	43	48	first strand
Strand 2	D	40	47	anti-parallel
Strand 3	D	34	35	anti-parallel
Strand 4	C	60	61	anti-parallel

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There are 7 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	7	9	first strand
Strand 2	D	16	22	anti-parallel
Strand 3	D	106	113	anti-parallel
Strand 4	D	160	167	anti-parallel
Strand 5	D	148	155	anti-parallel
Strand 6	D	134	139	anti-parallel
Strand 7	D	91	97	anti-parallel

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There are 3 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	5	8	first strand
Strand 2	E	17	20	anti-parallel
Strand 3	E	112	114	anti-parallel

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There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	43	48	first strand
Strand 2	E	40	47	anti-parallel
Strand 3	E	31	35	anti-parallel
Strand 4	F	60	64	anti-parallel

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There are 3 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	62	63	first strand
Strand 2	F	32	35	anti-parallel
Strand 3	F	40	41	anti-parallel

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There are 5 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	92	97	first strand
Strand 2	E	134	142	anti-parallel
Strand 3	E	145	153	anti-parallel
Strand 4	E	162	167	anti-parallel
Strand 5	E	106	110	anti-parallel

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There are 8 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	89	90	first strand
Strand 2	F	5	9	parallel
Strand 3	F	16	22	anti-parallel
Strand 4	F	106	113	anti-parallel
Strand 5	F	160	167	anti-parallel
Strand 6	F	145	155	anti-parallel
Strand 7	F	134	142	anti-parallel
Strand 8	F	94	97	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8VF2

Analysis of interatomic Contacts of Structural Units in PDB entry:
8VF2