Analysis of interatomic Contacts of Structural Units in PDB entry:
8VF4

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8VF4 entry

There are 12 chains in PDB entry 8VF4 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	MET 1	LYS 226
B	MET 1	LEU 227
C	G 1	G 15
D	T 17	C 31
E	G 1	G 15
F	T 17	C 31
G	G 1	G 15
H	T 17	C 31
I	MET 1	LYS 226
J	MET 1	LEU 227
K	MET 1	LYS 226
L	MET 1	LEU 227

There are 40 helices in PDB entry 8VF4. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	75	82	Right-handed alpha
Helix 2	AA2	A	83	87	Right-handed 310
Helix 3	AA3	A	119	133	Right-handed alpha
Helix 4	AA4	A	188	203	Right-handed alpha
Helix 5	AA5	A	213	226	Right-handed alpha
Helix 6	AA6	B	75	82	Right-handed alpha
Helix 7	AA7	B	83	87	Right-handed 310
Helix 8	AA8	B	99	101	Right-handed 310
Helix 9	AA9	B	115	117	Right-handed 310
Helix 10	AB1	B	118	133	Right-handed alpha
Helix 11	AB2	B	178	183	Right-handed alpha
Helix 12	AB3	B	188	203	Right-handed alpha
Helix 13	AB4	B	213	227	Right-handed alpha
Helix 14	AB5	I	75	82	Right-handed alpha
Helix 15	AB6	I	82	87	Right-handed alpha
Helix 16	AB7	I	119	133	Right-handed alpha
Helix 17	AB8	I	178	183	Right-handed alpha
Helix 18	AB9	I	188	203	Right-handed alpha
Helix 19	AC1	I	213	226	Right-handed alpha
Helix 20	AC2	J	75	80	Right-handed alpha
Helix 21	AC3	J	82	87	Right-handed 310
Helix 22	AC4	J	115	117	Right-handed 310
Helix 23	AC5	J	118	133	Right-handed alpha
Helix 24	AC6	J	178	183	Right-handed alpha
Helix 25	AC7	J	188	202	Right-handed alpha
Helix 26	AC8	J	213	227	Right-handed alpha
Helix 27	AC9	K	75	82	Right-handed alpha
Helix 28	AD1	K	82	87	Right-handed alpha
Helix 29	AD2	K	102	106	Right-handed 310
Helix 30	AD3	K	119	133	Right-handed alpha
Helix 31	AD4	K	188	203	Right-handed alpha
Helix 32	AD5	K	213	226	Right-handed alpha
Helix 33	AD6	L	75	81	Right-handed alpha
Helix 34	AD7	L	82	86	Right-handed 310
Helix 35	AD8	L	99	101	Right-handed 310
Helix 36	AD9	L	102	104	Right-handed 310
Helix 37	AE1	L	118	133	Right-handed alpha
Helix 38	AE2	L	169	173	Right-handed 310
Helix 39	AE3	L	188	202	Right-handed alpha
Helix 40	AE4	L	213	227	Right-handed alpha

There are 19 sheets in PDB entry 8VF4. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	7	8	first strand
Strand 2	A	17	18	anti-parallel

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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	21	22	first strand
Strand 2	A	106	111	anti-parallel
Strand 3	A	162	167	anti-parallel
Strand 4	A	149	153	anti-parallel
Strand 5	A	134	139	anti-parallel
Strand 6	A	91	97	anti-parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	32	35	first strand
Strand 2	B	60	63	anti-parallel

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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	53	54	first strand
Strand 2	A	42	48	anti-parallel
Strand 3	B	40	48	anti-parallel
Strand 4	B	34	35	anti-parallel

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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	53	54	first strand
Strand 2	A	42	48	anti-parallel
Strand 3	B	40	48	anti-parallel
Strand 4	B	53	54	anti-parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	141	142	first strand
Strand 2	A	145	146	anti-parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	7	8	first strand
Strand 2	B	17	18	anti-parallel

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There are 6 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	21	22	first strand
Strand 2	B	106	111	anti-parallel
Strand 3	B	160	167	anti-parallel
Strand 4	B	149	155	anti-parallel
Strand 5	B	134	138	anti-parallel
Strand 6	B	94	97	anti-parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	141	142	first strand
Strand 2	B	145	146	anti-parallel

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There are 8 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	5	11	first strand
Strand 2	I	14	22	anti-parallel
Strand 3	I	106	114	anti-parallel
Strand 4	I	160	167	anti-parallel
Strand 5	I	145	155	anti-parallel
Strand 6	I	134	142	anti-parallel
Strand 7	I	90	97	anti-parallel
Strand 8	I	5	11	parallel

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There are 3 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	42	48	first strand
Strand 2	J	40	48	anti-parallel
Strand 3	J	34	35	anti-parallel

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There are 7 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	5	6	first strand
Strand 2	J	19	22	anti-parallel
Strand 3	J	109	113	anti-parallel
Strand 4	J	160	167	anti-parallel
Strand 5	J	145	155	anti-parallel
Strand 6	J	136	142	anti-parallel
Strand 7	J	91	95	anti-parallel

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There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	63	65	first strand
Strand 2	J	71	73	anti-parallel

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There are 7 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	8	11	first strand
Strand 2	K	14	22	anti-parallel
Strand 3	K	110	114	anti-parallel
Strand 4	K	160	166	anti-parallel
Strand 5	K	145	155	anti-parallel
Strand 6	K	134	142	anti-parallel
Strand 7	K	92	97	anti-parallel

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There are 2 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	31	35	first strand
Strand 2	L	60	64	anti-parallel

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There are 3 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	54	55	first strand
Strand 2	K	42	47	anti-parallel
Strand 3	L	45	48	anti-parallel

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There are 2 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	61	64	first strand
Strand 2	L	31	34	anti-parallel

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There are 7 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	3	9	first strand
Strand 2	L	16	22	anti-parallel
Strand 3	L	106	114	anti-parallel
Strand 4	L	159	167	anti-parallel
Strand 5	L	149	156	anti-parallel
Strand 6	L	134	138	anti-parallel
Strand 7	L	92	97	anti-parallel

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There are 2 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	141	142	first strand
Strand 2	L	145	146	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8VF4

Analysis of interatomic Contacts of Structural Units in PDB entry:
8VF4