Analysis of interatomic Contacts of Structural Units in PDB entry:
8VF5


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8VF5 entry

There are 4 chains in PDB entry 8VF5 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 1LYS 226
B
 MET 1LEU 227
G
 C 1 T 21
H
 A 13 G 33
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 15 helices in PDB entry 8VF5. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
75 80Right-handed alpha
Helix 2
AA2
A
81 82Right-handed 310
Helix 3
AA3
A
83 87Right-handed 310
Helix 4
AA4
A
119 133Right-handed alpha
Helix 5
AA5
A
188 202Right-handed alpha
Helix 6
AA6
A
207 211Right-handed 310
Helix 7
AA7
A
213 226Right-handed alpha
Helix 8
AA8
B
75 82Right-handed alpha
Helix 9
AA9
B
83 87Right-handed 310
Helix 10
AB1
B
97 101Right-handed 310
Helix 11
AB2
B
115 117Right-handed 310
Helix 12
AB3
B
118 133Right-handed alpha
Helix 13
AB4
B
178 183Right-handed alpha
Helix 14
AB5
B
188 201Right-handed alpha
Helix 15
AB6
B
213 227Right-handed alpha
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There are 5 sheets in PDB entry 8VF5. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
14 17first strand
Strand 2
A
8 11anti-parallel
Strand 3
A
89 90parallel
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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
21 22first strand
Strand 2
A
109 111anti-parallel
Strand 3
A
162 166anti-parallel
Strand 4
A
149 153anti-parallel
Strand 5
A
134 138anti-parallel
Strand 6
A
92 97anti-parallel
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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
32 35first strand
Strand 2
B
60 64anti-parallel
Strand 3
B
72 73anti-parallel
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There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
42 48first strand
Strand 2
B
40 48anti-parallel
Strand 3
B
32 35anti-parallel
Strand 4
A
61 65anti-parallel
Strand 5
A
71 73anti-parallel
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There are 7 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
7 9first strand
Strand 2
B
16 22anti-parallel
Strand 3
B
106 113anti-parallel
Strand 4
B
160 167anti-parallel
Strand 5
B
149 155anti-parallel
Strand 6
B
135 138anti-parallel
Strand 7
B
94 96anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il