Analysis of interatomic Contacts of Structural Units in PDB entry:
8VF7

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8VF7 entry

There are 3 chains in PDB entry 8VF7 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	ALA 859	ALA 2112
B	ALA 859	ASP 2155
B	LEU 2157	ALA 2194

There are107 helices in PDB entry 8VF7. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	870	877	Right-handed 310
Helix 2	AA2	A	887	904	Right-handed alpha
Helix 3	AA3	A	906	910	Right-handed 310
Helix 4	AA4	A	965	970	Right-handed 310
Helix 5	AA5	A	987	998	Right-handed alpha
Helix 6	AA6	A	1025	1040	Right-handed alpha
Helix 7	AA7	A	1058	1066	Right-handed alpha
Helix 8	AA8	A	1126	1130	Right-handed 310
Helix 9	AA9	A	1131	1145	Right-handed alpha
Helix 10	AB1	A	1176	1189	Right-handed alpha
Helix 11	AB2	A	1194	1200	Right-handed alpha
Helix 12	AB3	A	1208	1212	Right-handed 310
Helix 13	AB4	A	1216	1221	Right-handed alpha
Helix 14	AB5	A	1221	1233	Right-handed alpha
Helix 15	AB6	A	1246	1251	Right-handed alpha
Helix 16	AB7	A	1252	1254	Right-handed 310
Helix 17	AB8	A	1255	1260	Right-handed alpha
Helix 18	AB9	A	1283	1290	Right-handed alpha
Helix 19	AC1	A	1324	1335	Right-handed alpha
Helix 20	AC2	A	1351	1360	Right-handed alpha
Helix 21	AC3	A	1364	1369	Right-handed alpha
Helix 22	AC4	A	1373	1384	Right-handed alpha
Helix 23	AC5	A	1419	1422	Right-handed 310
Helix 24	AC6	A	1423	1432	Right-handed alpha
Helix 25	AC7	A	1452	1461	Right-handed alpha
Helix 26	AC8	A	1465	1467	Right-handed 310
Helix 27	AC9	A	1490	1500	Right-handed alpha
Helix 28	AD1	A	1540	1542	Right-handed 310
Helix 29	AD2	A	1550	1553	Right-handed 310
Helix 30	AD3	A	1572	1580	Right-handed alpha
Helix 31	AD4	A	1584	1588	Right-handed 310
Helix 32	AD5	A	1629	1631	Right-handed 310
Helix 33	AD6	A	1641	1646	Right-handed alpha
Helix 34	AD7	A	1648	1661	Right-handed alpha
Helix 35	AD8	A	1678	1691	Right-handed alpha
Helix 36	AD9	A	1701	1712	Right-handed alpha
Helix 37	AE1	A	1716	1718	Right-handed 310
Helix 38	AE2	A	1726	1736	Right-handed alpha
Helix 39	AE3	A	1749	1758	Right-handed alpha
Helix 40	AE4	A	1771	1777	Right-handed alpha
Helix 41	AE5	A	1783	1788	Right-handed 310
Helix 42	AE6	A	1797	1802	Right-handed alpha
Helix 43	AE7	A	1803	1820	Right-handed alpha
Helix 44	AE8	A	1832	1834	Right-handed 310
Helix 45	AE9	A	1835	1845	Right-handed alpha
Helix 46	AF1	A	1894	1907	Right-handed alpha
Helix 47	AF2	A	1922	1935	Right-handed alpha
Helix 48	AF3	A	1948	1963	Right-handed alpha
Helix 49	AF4	A	1984	2010	Right-handed alpha
Helix 50	AF5	A	2022	2027	Right-handed alpha
Helix 51	AF6	A	2031	2051	Right-handed alpha
Helix 52	AF7	A	2087	2099	Right-handed alpha
Helix 53	AF8	B	872	876	Right-handed 310
Helix 54	AF9	B	887	904	Right-handed alpha
Helix 55	AG1	B	906	910	Right-handed 310
Helix 56	AG2	B	965	970	Right-handed 310
Helix 57	AG3	B	986	998	Right-handed alpha
Helix 58	AG4	B	1025	1040	Right-handed alpha
Helix 59	AG5	B	1058	1066	Right-handed alpha
Helix 60	AG6	B	1131	1150	Right-handed alpha
Helix 61	AG7	B	1176	1188	Right-handed alpha
Helix 62	AG8	B	1191	1194	Right-handed 310
Helix 63	AG9	B	1195	1203	Right-handed alpha
Helix 64	AH1	B	1208	1211	Right-handed 310
Helix 65	AH2	B	1212	1221	Right-handed alpha
Helix 66	AH3	B	1221	1234	Right-handed alpha
Helix 67	AH4	B	1246	1251	Right-handed alpha
Helix 68	AH5	B	1252	1254	Right-handed 310
Helix 69	AH6	B	1255	1260	Right-handed alpha
Helix 70	AH7	B	1276	1283	Right-handed alpha
Helix 71	AH8	B	1283	1288	Right-handed alpha
Helix 72	AH9	B	1324	1335	Right-handed alpha
Helix 73	AI1	B	1351	1361	Right-handed alpha
Helix 74	AI2	B	1366	1371	Right-handed alpha
Helix 75	AI3	B	1373	1384	Right-handed alpha
Helix 76	AI4	B	1423	1435	Right-handed alpha
Helix 77	AI5	B	1452	1461	Right-handed alpha
Helix 78	AI6	B	1465	1467	Right-handed 310
Helix 79	AI7	B	1490	1500	Right-handed alpha
Helix 80	AI8	B	1550	1553	Right-handed 310
Helix 81	AI9	B	1572	1581	Right-handed alpha
Helix 82	AJ1	B	1629	1631	Right-handed 310
Helix 83	AJ2	B	1641	1646	Right-handed alpha
Helix 84	AJ3	B	1648	1660	Right-handed alpha
Helix 85	AJ4	B	1678	1691	Right-handed alpha
Helix 86	AJ5	B	1701	1712	Right-handed alpha
Helix 87	AJ6	B	1716	1718	Right-handed 310
Helix 88	AJ7	B	1727	1736	Right-handed alpha
Helix 89	AJ8	B	1749	1759	Right-handed alpha
Helix 90	AJ9	B	1771	1777	Right-handed alpha
Helix 91	AK1	B	1783	1787	Right-handed 310
Helix 92	AK2	B	1795	1799	Right-handed 310
Helix 93	AK3	B	1804	1821	Right-handed alpha
Helix 94	AK4	B	1835	1846	Right-handed alpha
Helix 95	AK5	B	1894	1906	Right-handed alpha
Helix 96	AK6	B	1922	1935	Right-handed alpha
Helix 97	AK7	B	1948	1963	Right-handed alpha
Helix 98	AK8	B	1979	1983	Right-handed 310
Helix 99	AK9	B	1984	2010	Right-handed alpha
Helix 100	AL1	B	2022	2027	Right-handed alpha
Helix 101	AL2	B	2031	2051	Right-handed alpha
Helix 102	AL3	B	2087	2100	Right-handed alpha
Helix 103	AL4	B	2126	2136	Right-handed alpha
Helix 104	AL5	B	2148	2153	Right-handed alpha
Helix 105	AL6	B	2155	2171	Right-handed alpha
Helix 106	AL7	B	2175	2182	Right-handed alpha
Helix 107	AL8	B	2183	2193	Right-handed alpha

There are 22 sheets in PDB entry 8VF7. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4,

There are 12 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	860	864	first strand
Strand 2	A	931	938	anti-parallel
Strand 3	A	943	948	anti-parallel
Strand 4	A	951	960	anti-parallel
Strand 5	A	912	919	anti-parallel
Strand 6	A	1047	1057	anti-parallel
Strand 7	A	1092	1101	anti-parallel
Strand 8	A	1086	1089	anti-parallel
Strand 9	A	1074	1081	anti-parallel
Strand 10	A	1017	1022	anti-parallel
Strand 11	A	1008	1011	anti-parallel
Strand 12	A	985	986	anti-parallel

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There are 10 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	860	864	first strand
Strand 2	A	931	938	anti-parallel
Strand 3	A	943	948	anti-parallel
Strand 4	A	951	960	anti-parallel
Strand 5	A	912	919	anti-parallel
Strand 6	A	1047	1057	anti-parallel
Strand 7	A	1092	1101	anti-parallel
Strand 8	A	1086	1089	anti-parallel
Strand 9	A	1074	1081	anti-parallel
Strand 10	A	1067	1068	anti-parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	879	880	first strand
Strand 2	A	883	884	anti-parallel

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There are 13 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1413	1416	first strand
Strand 2	A	1441	1445	parallel
Strand 3	A	1469	1474	parallel
Strand 4	A	1505	1506	parallel
Strand 5	A	1511	1518	anti-parallel
Strand 6	A	1113	1121	anti-parallel
Strand 7	A	2105	2111	anti-parallel
Strand 8	A	2056	2060	parallel
Strand 9	A	2015	2021	parallel
Strand 10	A	1965	1970	parallel
Strand 11	A	1886	1890	parallel
Strand 12	A	1911	1915	parallel
Strand 13	A	1938	1941	parallel

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There are 8 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1413	1416	first strand
Strand 2	A	1441	1445	parallel
Strand 3	A	1469	1474	parallel
Strand 4	A	1505	1506	parallel
Strand 5	A	1511	1518	anti-parallel
Strand 6	A	1113	1121	anti-parallel
Strand 7	A	2105	2111	anti-parallel
Strand 8	A	2083	2084	anti-parallel

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There are 7 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1123	1124	first strand
Strand 2	A	1387	1393	parallel
Strand 3	A	1399	1404	anti-parallel
Strand 4	A	1341	1346	anti-parallel
Strand 5	A	1312	1314	parallel
Strand 6	A	1240	1244	parallel
Strand 7	A	1268	1272	parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1525	1528	first strand
Strand 2	A	1873	1876	anti-parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1531	1535	first strand
Strand 2	A	1544	1548	anti-parallel

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There are 5 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1625	1628	first strand
Strand 2	A	1562	1570	anti-parallel
Strand 3	A	1602	1606	anti-parallel
Strand 4	A	1612	1616	anti-parallel
Strand 5	A	1633	1634	anti-parallel

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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1625	1628	first strand
Strand 2	A	1562	1570	anti-parallel
Strand 3	A	1851	1855	anti-parallel
Strand 4	A	1828	1831	parallel

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There are 12 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1720	1722	first strand
Strand 2	A	1694	1699	parallel
Strand 3	A	1670	1673	parallel
Strand 4	A	1741	1746	parallel
Strand 5	A	1760	1768	parallel
Strand 6	A	1790	1793	parallel
Strand 7	B	1789	1793	anti-parallel
Strand 8	B	1760	1768	parallel
Strand 9	B	1741	1746	parallel
Strand 10	B	1670	1674	parallel
Strand 11	B	1694	1699	parallel
Strand 12	B	1720	1722	parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1779	1781	first strand
Strand 2	B	1779	1781	anti-parallel

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There are 11 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	860	865	first strand
Strand 2	B	930	938	anti-parallel
Strand 3	B	943	948	anti-parallel
Strand 4	B	951	960	anti-parallel
Strand 5	B	912	919	anti-parallel
Strand 6	B	1047	1057	anti-parallel
Strand 7	B	1092	1101	anti-parallel
Strand 8	B	1086	1089	anti-parallel
Strand 9	B	1074	1081	anti-parallel
Strand 10	B	1018	1021	anti-parallel
Strand 11	B	1008	1011	anti-parallel

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There are 10 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	860	865	first strand
Strand 2	B	930	938	anti-parallel
Strand 3	B	943	948	anti-parallel
Strand 4	B	951	960	anti-parallel
Strand 5	B	912	919	anti-parallel
Strand 6	B	1047	1057	anti-parallel
Strand 7	B	1092	1101	anti-parallel
Strand 8	B	1086	1089	anti-parallel
Strand 9	B	1074	1081	anti-parallel
Strand 10	B	1067	1068	anti-parallel

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There are 3 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	883	884	first strand
Strand 2	B	878	880	anti-parallel
Strand 3	B	999	1001	anti-parallel

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There are 13 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	1413	1416	first strand
Strand 2	B	1441	1445	parallel
Strand 3	B	1469	1474	parallel
Strand 4	B	1505	1506	parallel
Strand 5	B	1511	1518	anti-parallel
Strand 6	B	1113	1121	anti-parallel
Strand 7	B	2105	2109	anti-parallel
Strand 8	B	2056	2060	parallel
Strand 9	B	2015	2021	parallel
Strand 10	B	1965	1970	parallel
Strand 11	B	1886	1890	parallel
Strand 12	B	1911	1915	parallel
Strand 13	B	1938	1942	parallel

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There are 7 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	1123	1125	first strand
Strand 2	B	1387	1393	parallel
Strand 3	B	1399	1404	anti-parallel
Strand 4	B	1336	1346	anti-parallel
Strand 5	B	1310	1314	parallel
Strand 6	B	1241	1244	parallel
Strand 7	B	1269	1272	parallel

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There are 2 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	1525	1528	first strand
Strand 2	B	1873	1876	anti-parallel

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There are 2 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	1531	1535	first strand
Strand 2	B	1544	1548	anti-parallel

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There are 5 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	1625	1628	first strand
Strand 2	B	1562	1570	anti-parallel
Strand 3	B	1602	1606	anti-parallel
Strand 4	B	1612	1616	anti-parallel
Strand 5	B	1633	1635	anti-parallel

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There are 4 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	1625	1628	first strand
Strand 2	B	1562	1570	anti-parallel
Strand 3	B	1851	1855	anti-parallel
Strand 4	B	1828	1832	parallel

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There are 2 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	2062	2063	first strand
Strand 2	B	2085	2086	parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8VF7

Analysis of interatomic Contacts of Structural Units in PDB entry:
8VF7