Analysis of interatomic Contacts of Structural Units in PDB entry:
8VG9


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8VG9 entry

There is 1 chain in PDB entry 8VG9 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ALA 12LEU 409
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 14 helices in PDB entry 8VG9. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
34 39Right-handed alpha
Helix 2
AA2
A
43 52Right-handed alpha
Helix 3
AA3
A
70 76Right-handed 310
Helix 4
AA4
A
77 87Right-handed alpha
Helix 5
AA5
A
115 117Right-handed 310
Helix 6
AA6
A
118 136Right-handed alpha
Helix 7
AA7
A
159 170Right-handed alpha
Helix 8
AA8
A
171 174Right-handed 310
Helix 9
AA9
A
200 208Right-handed alpha
Helix 10
AB1
A
209 216Right-handed alpha
Helix 11
AB2
A
227 231Right-handed 310
Helix 12
AB3
A
233 238Right-handed alpha
Helix 13
AB4
A
263 276Right-handed alpha
Helix 14
AB5
A
301 312Right-handed alpha
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There are 3 sheets in PDB entry 8VG9. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3,

There are 9 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
382 386first strand
Strand 2
A
369 375anti-parallel
Strand 3
A
401 408anti-parallel
Strand 4
A
343 349anti-parallel
Strand 5
A
331 337anti-parallel
Strand 6
A
319 323anti-parallel
Strand 7
A
15 25anti-parallel
Strand 8
A
355 361parallel
Strand 9
A
392 397anti-parallel
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There are 8 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
178 180first strand
Strand 2
A
142 144parallel
Strand 3
A
90 95parallel
Strand 4
A
62 67parallel
Strand 5
A
28 32parallel
Strand 6
A
281 286parallel
Strand 7
A
243 247parallel
Strand 8
A
219 222parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
104 105first strand
Strand 2
A
112 113anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il