Analysis of interatomic Contacts of Structural Units in PDB entry:
8VGA


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8VGA entry

There are 2 chains in PDB entry 8VGA (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ASN 36SER 371
B
 LYS 35SER 371
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 38 helices in PDB entry 8VGA. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
49 62Right-handed alpha
Helix 2
AA2
A
66 72Right-handed alpha
Helix 3
AA3
A
73 99Right-handed alpha
Helix 4
AA4
A
107 123Right-handed alpha
Helix 5
AA5
A
130 142Right-handed alpha
Helix 6
AA6
A
143 151Right-handed alpha
Helix 7
AA7
A
152 156Right-handed 310
Helix 8
AA8
A
161 168Right-handed alpha
Helix 9
AA9
A
168 173Right-handed alpha
Helix 10
AB1
A
180 187Right-handed alpha
Helix 11
AB2
A
214 226Right-handed 310
Helix 12
AB3
A
238 240Right-handed 310
Helix 13
AB4
A
251 265Right-handed alpha
Helix 14
AB5
A
266 270Right-handed 310
Helix 15
AB6
A
280 291Right-handed alpha
Helix 16
AB7
A
292 300Right-handed 310
Helix 17
AB8
A
308 331Right-handed alpha
Helix 18
AB9
A
334 339Right-handed alpha
Helix 19
AC1
A
350 369Right-handed alpha
Helix 20
AC2
B
49 62Right-handed alpha
Helix 21
AC3
B
66 72Right-handed alpha
Helix 22
AC4
B
73 99Right-handed alpha
Helix 23
AC5
B
107 123Right-handed alpha
Helix 24
AC6
B
130 142Right-handed alpha
Helix 25
AC7
B
143 152Right-handed alpha
Helix 26
AC8
B
153 156Right-handed 310
Helix 27
AC9
B
161 168Right-handed alpha
Helix 28
AD1
B
168 174Right-handed alpha
Helix 29
AD2
B
180 187Right-handed alpha
Helix 30
AD3
B
214 226Right-handed 310
Helix 31
AD4
B
238 242Right-handed 310
Helix 32
AD5
B
251 265Right-handed alpha
Helix 33
AD6
B
266 270Right-handed 310
Helix 34
AD7
B
280 291Right-handed alpha
Helix 35
AD8
B
292 300Right-handed 310
Helix 36
AD9
B
308 331Right-handed alpha
Helix 37
AE1
B
334 338Right-handed 310
Helix 38
AE2
B
350 368Right-handed alpha
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There are 2 sheets in PDB entry 8VGA. Click on sheet of interest to get list of strands forming it: AA1, AA2,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
194 201first strand
Strand 2
A
204 211anti-parallel
Strand 3
A
37 43parallel
Strand 4
A
228 236parallel
Strand 5
A
273 279parallel
Strand 6
A
341 345parallel
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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
194 201first strand
Strand 2
B
204 211anti-parallel
Strand 3
B
37 44parallel
Strand 4
B
228 236parallel
Strand 5
B
273 279parallel
Strand 6
B
341 345parallel
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