Analysis of interatomic Contacts of Structural Units in PDB entry:
8VGB


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8VGB entry

There are 4 chains in PDB entry 8VGB (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 HIS 40ARG 375
B
 ILE 39ARG 375
C
 HIS 40ARG 375
D
 HIS 40ARG 375
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 63 helices in PDB entry 8VGB. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
51 63Right-handed alpha
Helix 2
AA2
A
70 101Right-handed alpha
Helix 3
AA3
A
110 112Right-handed 310
Helix 4
AA4
A
113 124Right-handed alpha
Helix 5
AA5
A
135 145Right-handed alpha
Helix 6
AA6
A
147 154Right-handed alpha
Helix 7
AA7
A
163 169Right-handed alpha
Helix 8
AA8
A
171 177Right-handed alpha
Helix 9
AA9
A
183 190Right-handed alpha
Helix 10
AB1
A
247 250Right-handed 310
Helix 11
AB2
A
260 275Right-handed alpha
Helix 12
AB3
A
289 297Right-handed alpha
Helix 13
AB4
A
301 305Right-handed 310
Helix 14
AB5
A
321 339Right-handed alpha
Helix 15
AB6
A
361 373Right-handed alpha
Helix 16
AB7
B
51 61Right-handed alpha
Helix 17
AB8
B
72 74Right-handed 310
Helix 18
AB9
B
75 101Right-handed alpha
Helix 19
AC1
B
110 114Right-handed 310
Helix 20
AC2
B
115 119Right-handed 310
Helix 21
AC3
B
135 145Right-handed alpha
Helix 22
AC4
B
146 154Right-handed alpha
Helix 23
AC5
B
165 171Right-handed alpha
Helix 24
AC6
B
171 177Right-handed alpha
Helix 25
AC7
B
183 190Right-handed alpha
Helix 26
AC8
B
231 235Right-handed 310
Helix 27
AC9
B
247 250Right-handed 310
Helix 28
AD1
B
260 275Right-handed alpha
Helix 29
AD2
B
276 279Right-handed 310
Helix 30
AD3
B
289 298Right-handed alpha
Helix 31
AD4
B
301 305Right-handed 310
Helix 32
AD5
B
321 340Right-handed alpha
Helix 33
AD6
B
362 373Right-handed alpha
Helix 34
AD7
C
51 62Right-handed alpha
Helix 35
AD8
C
70 74Right-handed 310
Helix 36
AD9
C
75 100Right-handed alpha
Helix 37
AE1
C
133 145Right-handed alpha
Helix 38
AE2
C
146 155Right-handed alpha
Helix 39
AE3
C
164 171Right-handed alpha
Helix 40
AE4
C
171 177Right-handed alpha
Helix 41
AE5
C
183 190Right-handed alpha
Helix 42
AE6
C
247 250Right-handed 310
Helix 43
AE7
C
260 275Right-handed alpha
Helix 44
AE8
C
289 297Right-handed alpha
Helix 45
AE9
C
301 305Right-handed 310
Helix 46
AF1
C
322 339Right-handed alpha
Helix 47
AF2
C
362 372Right-handed alpha
Helix 48
AF3
D
51 63Right-handed alpha
Helix 49
AF4
D
75 101Right-handed alpha
Helix 50
AF5
D
110 112Right-handed 310
Helix 51
AF6
D
113 118Right-handed alpha
Helix 52
AF7
D
133 145Right-handed alpha
Helix 53
AF8
D
146 154Right-handed alpha
Helix 54
AF9
D
163 171Right-handed alpha
Helix 55
AG1
D
171 177Right-handed alpha
Helix 56
AG2
D
183 190Right-handed alpha
Helix 57
AG3
D
247 250Right-handed 310
Helix 58
AG4
D
260 274Right-handed alpha
Helix 59
AG5
D
289 298Right-handed alpha
Helix 60
AG6
D
301 305Right-handed 310
Helix 61
AG7
D
321 340Right-handed alpha
Helix 62
AG8
D
361 363Right-handed 310
Helix 63
AG9
D
364 373Right-handed alpha
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There are 4 sheets in PDB entry 8VGB. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
198 201first strand
Strand 2
A
216 219anti-parallel
Strand 3
A
41 46parallel
Strand 4
A
239 245parallel
Strand 5
A
282 288parallel
Strand 6
A
349 353parallel
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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
196 202first strand
Strand 2
B
215 221anti-parallel
Strand 3
B
41 46parallel
Strand 4
B
239 245parallel
Strand 5
B
282 288parallel
Strand 6
B
349 353parallel
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There are 6 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
198 201first strand
Strand 2
C
216 219anti-parallel
Strand 3
C
41 46parallel
Strand 4
C
239 245parallel
Strand 5
C
282 288parallel
Strand 6
C
349 353parallel
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There are 6 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
198 202first strand
Strand 2
D
215 219anti-parallel
Strand 3
D
41 46parallel
Strand 4
D
239 245parallel
Strand 5
D
282 288parallel
Strand 6
D
349 353parallel
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