Analysis of interatomic Contacts of Structural Units in PDB entry:
8VGD


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8VGD entry

There are 3 chains in PDB entry 8VGD (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLU 61GLY 134
B
 LYS 62VAL 133
P
 GLN 55THR 63
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 4 helices in PDB entry 8VGD. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
85 95Right-handed alpha
Helix 2
AA2
A
111 125Right-handed alpha
Helix 3
AA3
B
85 95Right-handed alpha
Helix 4
AA4
B
111 125Right-handed alpha
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There is 1 sheet (AA1) in PDB entry 8VGD.

There are 11 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
79 81first strand
Strand 2
A
74 76anti-parallel
Strand 3
A
64 68anti-parallel
Strand 4
A
102 106parallel
Strand 5
A
130 133parallel
Strand 6
P
57 61parallel
Strand 7
B
130 133anti-parallel
Strand 8
B
102 106parallel
Strand 9
B
64 68parallel
Strand 10
B
74 76anti-parallel
Strand 11
B
79 81anti-parallel
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