Analysis of interatomic Contacts of Structural Units in PDB entry:
8VGL

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8VGL entry

There are 8 chains in PDB entry 8VGL (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	ARG 1489	GLU 1759
B	ARG 1489	GLU 1759
C	ARG 1489	GLU 1759
D	ARG 1489	GLU 1759
H	GLU 1	GLY 218
L	GLU 1	CYS 214
F	GLU 1	CYS 214
E	GLU 1	GLY 218

There are 82 helices in PDB entry 8VGL. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	1490	1502	Right-handed alpha
Helix 2	AA2	A	1503	1524	Right-handed alpha
Helix 3	AA3	A	1529	1559	Right-handed alpha
Helix 4	AA4	A	1560	1564	Right-handed 310
Helix 5	AA5	A	1565	1584	Right-handed alpha
Helix 6	AA6	A	1584	1590	Right-handed alpha
Helix 7	AA7	A	1596	1601	Right-handed alpha
Helix 8	AA8	A	1602	1616	Right-handed alpha
Helix 9	AA9	A	1616	1656	Right-handed alpha
Helix 10	AB1	A	1659	1664	Right-handed alpha
Helix 11	AB2	A	1665	1678	Right-handed alpha
Helix 12	AB3	A	1686	1692	Right-handed alpha
Helix 13	AB4	A	1693	1696	Right-handed 310
Helix 14	AB5	A	1697	1751	Right-handed alpha
Helix 15	AB6	A	1751	1756	Right-handed alpha
Helix 16	AB7	A	1757	1759	Right-handed 310
Helix 17	AB8	B	1489	1489	Right-handed 310
Helix 18	AB9	B	1490	1502	Right-handed alpha
Helix 19	AC1	B	1503	1524	Right-handed alpha
Helix 20	AC2	B	1529	1559	Right-handed alpha
Helix 21	AC3	B	1560	1562	Right-handed 310
Helix 22	AC4	B	1565	1584	Right-handed alpha
Helix 23	AC5	B	1584	1590	Right-handed alpha
Helix 24	AC6	B	1594	1601	Right-handed alpha
Helix 25	AC7	B	1602	1616	Right-handed alpha
Helix 26	AC8	B	1616	1656	Right-handed alpha
Helix 27	AC9	B	1659	1664	Right-handed alpha
Helix 28	AD1	B	1665	1678	Right-handed alpha
Helix 29	AD2	B	1686	1692	Right-handed alpha
Helix 30	AD3	B	1693	1696	Right-handed 310
Helix 31	AD4	B	1697	1757	Right-handed alpha
Helix 32	AD5	B	1758	1759	Right-handed 310
Helix 33	AD6	C	1489	1489	Right-handed 310
Helix 34	AD7	C	1490	1502	Right-handed alpha
Helix 35	AD8	C	1503	1524	Right-handed alpha
Helix 36	AD9	C	1529	1559	Right-handed alpha
Helix 37	AE1	C	1560	1564	Right-handed 310
Helix 38	AE2	C	1565	1584	Right-handed alpha
Helix 39	AE3	C	1584	1590	Right-handed alpha
Helix 40	AE4	C	1596	1601	Right-handed alpha
Helix 41	AE5	C	1602	1616	Right-handed alpha
Helix 42	AE6	C	1616	1656	Right-handed alpha
Helix 43	AE7	C	1659	1664	Right-handed alpha
Helix 44	AE8	C	1665	1678	Right-handed alpha
Helix 45	AE9	C	1686	1692	Right-handed alpha
Helix 46	AF1	C	1693	1696	Right-handed 310
Helix 47	AF2	C	1697	1751	Right-handed alpha
Helix 48	AF3	C	1751	1756	Right-handed alpha
Helix 49	AF4	C	1757	1759	Right-handed 310
Helix 50	AF5	D	1489	1489	Right-handed 310
Helix 51	AF6	D	1490	1502	Right-handed alpha
Helix 52	AF7	D	1503	1524	Right-handed alpha
Helix 53	AF8	D	1529	1559	Right-handed alpha
Helix 54	AF9	D	1560	1562	Right-handed 310
Helix 55	AG1	D	1565	1584	Right-handed alpha
Helix 56	AG2	D	1584	1590	Right-handed alpha
Helix 57	AG3	D	1596	1601	Right-handed alpha
Helix 58	AG4	D	1602	1616	Right-handed alpha
Helix 59	AG5	D	1616	1656	Right-handed alpha
Helix 60	AG6	D	1659	1664	Right-handed alpha
Helix 61	AG7	D	1665	1678	Right-handed alpha
Helix 62	AG8	D	1686	1692	Right-handed alpha
Helix 63	AG9	D	1693	1696	Right-handed 310
Helix 64	AH1	D	1697	1757	Right-handed alpha
Helix 65	AH2	H	28	32	Right-handed 310
Helix 66	AH3	H	83	87	Right-handed 310
Helix 67	AH4	H	160	162	Right-handed 310
Helix 68	AH5	H	188	192	Right-handed 310
Helix 69	AH6	H	204	207	Right-handed 310
Helix 70	AH7	L	29	31	Right-handed 310
Helix 71	AH8	L	79	83	Right-handed 310
Helix 72	AH9	L	121	127	Right-handed alpha
Helix 73	AI1	L	183	188	Right-handed alpha
Helix 74	AI2	F	29	31	Right-handed 310
Helix 75	AI3	F	79	83	Right-handed 310
Helix 76	AI4	F	121	127	Right-handed alpha
Helix 77	AI5	F	183	188	Right-handed alpha
Helix 78	AI6	E	28	32	Right-handed 310
Helix 79	AI7	E	83	87	Right-handed 310
Helix 80	AI8	E	160	162	Right-handed 310
Helix 81	AI9	E	188	192	Right-handed 310
Helix 82	AJ1	E	204	207	Right-handed 310

There are 22 sheets in PDB entry 8VGL. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	3	7	first strand
Strand 2	H	18	25	anti-parallel
Strand 3	H	77	82	anti-parallel
Strand 4	H	67	72	anti-parallel

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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	10	12	first strand
Strand 2	H	107	111	parallel
Strand 3	H	88	95	anti-parallel
Strand 4	H	34	39	anti-parallel
Strand 5	H	45	51	anti-parallel
Strand 6	H	57	58	anti-parallel

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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	10	12	first strand
Strand 2	H	107	111	parallel
Strand 3	H	88	95	anti-parallel
Strand 4	H	100	103	anti-parallel

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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	124	128	first strand
Strand 2	H	140	149	anti-parallel
Strand 3	H	179	187	anti-parallel
Strand 4	H	167	174	anti-parallel

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There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	155	158	first strand
Strand 2	H	198	203	anti-parallel
Strand 3	H	208	213	anti-parallel

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There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	4	7	first strand
Strand 2	L	19	28	anti-parallel
Strand 3	L	62	75	anti-parallel

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There are 6 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	10	13	first strand
Strand 2	L	102	106	parallel
Strand 3	L	85	92	anti-parallel
Strand 4	L	33	38	anti-parallel
Strand 5	L	45	49	anti-parallel
Strand 6	L	53	54	anti-parallel

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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	10	13	first strand
Strand 2	L	102	106	parallel
Strand 3	L	85	92	anti-parallel
Strand 4	L	95	98	anti-parallel

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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	114	118	first strand
Strand 2	L	129	139	anti-parallel
Strand 3	L	173	182	anti-parallel
Strand 4	L	159	163	anti-parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	144	145	first strand
Strand 2	L	197	198	anti-parallel

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There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	153	154	first strand
Strand 2	L	148	150	anti-parallel
Strand 3	L	191	194	anti-parallel
Strand 4	L	208	210	anti-parallel

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There are 3 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	4	7	first strand
Strand 2	F	19	28	anti-parallel
Strand 3	F	62	75	anti-parallel

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There are 6 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	10	13	first strand
Strand 2	F	102	106	parallel
Strand 3	F	85	92	anti-parallel
Strand 4	F	33	38	anti-parallel
Strand 5	F	45	49	anti-parallel
Strand 6	F	53	54	anti-parallel

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There are 4 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	10	13	first strand
Strand 2	F	102	106	parallel
Strand 3	F	85	92	anti-parallel
Strand 4	F	95	98	anti-parallel

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There are 4 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	114	118	first strand
Strand 2	F	129	139	anti-parallel
Strand 3	F	173	182	anti-parallel
Strand 4	F	159	163	anti-parallel

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There are 2 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	144	145	first strand
Strand 2	F	197	198	anti-parallel

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There are 4 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	153	154	first strand
Strand 2	F	148	150	anti-parallel
Strand 3	F	191	194	anti-parallel
Strand 4	F	208	210	anti-parallel

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There are 4 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	3	7	first strand
Strand 2	E	18	25	anti-parallel
Strand 3	E	77	82	anti-parallel
Strand 4	E	67	72	anti-parallel

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There are 6 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	10	12	first strand
Strand 2	E	107	111	parallel
Strand 3	E	88	95	anti-parallel
Strand 4	E	34	39	anti-parallel
Strand 5	E	45	51	anti-parallel
Strand 6	E	57	58	anti-parallel

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There are 4 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	10	12	first strand
Strand 2	E	107	111	parallel
Strand 3	E	88	95	anti-parallel
Strand 4	E	100	103	anti-parallel

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There are 4 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	124	128	first strand
Strand 2	E	140	149	anti-parallel
Strand 3	E	179	187	anti-parallel
Strand 4	E	167	174	anti-parallel

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There are 3 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	155	158	first strand
Strand 2	E	198	203	anti-parallel
Strand 3	E	208	213	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8VGL

Analysis of interatomic Contacts of Structural Units in PDB entry:
8VGL