Analysis of interatomic Contacts of Structural Units in PDB entry:
8VGO

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8VGO entry

There are 6 chains in PDB entry 8VGO (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	GLN 1	CYS 221
B	GLN 1	CYS 214
G	MET 46	THR 219
H	GLN 1	CYS 221
I	MET 46	THR 219
L	GLN 1	CYS 214

There are 36 helices in PDB entry 8VGO. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	28	32	Right-handed 310
Helix 2	AA2	A	61	64	Right-handed 310
Helix 3	AA3	A	83	87	Right-handed 310
Helix 4	AA4	A	131	133	Right-handed 310
Helix 5	AA5	A	161	163	Right-handed 310
Helix 6	AA6	A	192	195	Right-handed 310
Helix 7	AA7	A	206	209	Right-handed 310
Helix 8	AA8	B	79	83	Right-handed 310
Helix 9	AA9	B	121	126	Right-handed alpha
Helix 10	AB1	B	183	187	Right-handed alpha
Helix 11	AB2	G	48	71	Right-handed alpha
Helix 12	AB3	G	79	84	Right-handed alpha
Helix 13	AB4	G	85	97	Right-handed alpha
Helix 14	AB5	G	98	102	Right-handed 310
Helix 15	AB6	G	114	143	Right-handed alpha
Helix 16	AB7	G	152	157	Right-handed alpha
Helix 17	AB8	G	171	176	Right-handed 310
Helix 18	AB9	G	177	216	Right-handed alpha
Helix 19	AC1	H	28	32	Right-handed 310
Helix 20	AC2	H	61	64	Right-handed 310
Helix 21	AC3	H	83	87	Right-handed 310
Helix 22	AC4	H	131	133	Right-handed 310
Helix 23	AC5	H	161	163	Right-handed 310
Helix 24	AC6	H	192	195	Right-handed 310
Helix 25	AC7	H	206	209	Right-handed 310
Helix 26	AC8	I	48	71	Right-handed alpha
Helix 27	AC9	I	79	84	Right-handed alpha
Helix 28	AD1	I	85	97	Right-handed alpha
Helix 29	AD2	I	98	102	Right-handed 310
Helix 30	AD3	I	114	143	Right-handed alpha
Helix 31	AD4	I	152	157	Right-handed alpha
Helix 32	AD5	I	171	176	Right-handed 310
Helix 33	AD6	I	177	216	Right-handed alpha
Helix 34	AD7	L	79	83	Right-handed 310
Helix 35	AD8	L	121	126	Right-handed alpha
Helix 36	AD9	L	183	187	Right-handed alpha

There are 22 sheets in PDB entry 8VGO. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	3	5	first strand
Strand 2	A	18	25	anti-parallel
Strand 3	A	77	82	anti-parallel
Strand 4	A	67	72	anti-parallel

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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	9	12	first strand
Strand 2	A	107	111	parallel
Strand 3	A	88	98	anti-parallel
Strand 4	A	33	40	anti-parallel
Strand 5	A	44	51	anti-parallel
Strand 6	A	57	59	anti-parallel

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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	9	12	first strand
Strand 2	A	107	111	parallel
Strand 3	A	88	98	anti-parallel
Strand 4	A	100	103	anti-parallel

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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	124	128	first strand
Strand 2	A	139	149	anti-parallel
Strand 3	A	181	190	anti-parallel
Strand 4	A	168	170	anti-parallel

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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	135	136	first strand
Strand 2	A	139	149	anti-parallel
Strand 3	A	181	190	anti-parallel
Strand 4	A	174	175	anti-parallel

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There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	156	159	first strand
Strand 2	A	199	205	anti-parallel
Strand 3	A	210	216	anti-parallel

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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	4	7	first strand
Strand 2	B	19	25	anti-parallel
Strand 3	B	70	75	anti-parallel
Strand 4	B	62	67	anti-parallel

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There are 6 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	10	13	first strand
Strand 2	B	102	106	parallel
Strand 3	B	84	90	anti-parallel
Strand 4	B	34	38	anti-parallel
Strand 5	B	45	49	anti-parallel
Strand 6	B	53	54	anti-parallel

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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	10	13	first strand
Strand 2	B	102	106	parallel
Strand 3	B	84	90	anti-parallel
Strand 4	B	97	98	anti-parallel

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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	114	118	first strand
Strand 2	B	129	139	anti-parallel
Strand 3	B	173	182	anti-parallel
Strand 4	B	159	163	anti-parallel

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There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	153	154	first strand
Strand 2	B	145	150	anti-parallel
Strand 3	B	191	197	anti-parallel
Strand 4	B	205	210	anti-parallel

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There are 4 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	3	5	first strand
Strand 2	H	18	25	anti-parallel
Strand 3	H	77	82	anti-parallel
Strand 4	H	67	72	anti-parallel

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There are 6 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	9	12	first strand
Strand 2	H	107	111	parallel
Strand 3	H	88	98	anti-parallel
Strand 4	H	33	40	anti-parallel
Strand 5	H	44	51	anti-parallel
Strand 6	H	57	59	anti-parallel

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There are 4 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	9	12	first strand
Strand 2	H	107	111	parallel
Strand 3	H	88	98	anti-parallel
Strand 4	H	100	103	anti-parallel

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There are 4 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	124	128	first strand
Strand 2	H	139	149	anti-parallel
Strand 3	H	181	190	anti-parallel
Strand 4	H	168	170	anti-parallel

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There are 4 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	135	136	first strand
Strand 2	H	139	149	anti-parallel
Strand 3	H	181	190	anti-parallel
Strand 4	H	174	175	anti-parallel

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There are 3 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	156	159	first strand
Strand 2	H	199	205	anti-parallel
Strand 3	H	210	216	anti-parallel

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There are 4 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	4	7	first strand
Strand 2	L	19	25	anti-parallel
Strand 3	L	70	75	anti-parallel
Strand 4	L	62	67	anti-parallel

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There are 6 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	10	13	first strand
Strand 2	L	102	106	parallel
Strand 3	L	84	90	anti-parallel
Strand 4	L	34	38	anti-parallel
Strand 5	L	45	49	anti-parallel
Strand 6	L	53	54	anti-parallel

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There are 4 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	10	13	first strand
Strand 2	L	102	106	parallel
Strand 3	L	84	90	anti-parallel
Strand 4	L	97	98	anti-parallel

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There are 4 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	114	118	first strand
Strand 2	L	129	139	anti-parallel
Strand 3	L	173	182	anti-parallel
Strand 4	L	159	163	anti-parallel

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There are 4 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	153	154	first strand
Strand 2	L	145	150	anti-parallel
Strand 3	L	191	197	anti-parallel
Strand 4	L	205	210	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8VGO

Analysis of interatomic Contacts of Structural Units in PDB entry:
8VGO