Analysis of interatomic Contacts of Structural Units in PDB entry:
8VGP


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8VGP entry

There are 3 chains in PDB entry 8VGP (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ILE 279PHE 496
H
 GLU 1PRO 218
L
 ASP 1GLY 212
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 17 helices in PDB entry 8VGP. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
283 290Right-handed alpha
Helix 2
AA2
A
316 320Right-handed 310
Helix 3
AA3
A
338 345Right-handed alpha
Helix 4
AA4
A
356 365Right-handed alpha
Helix 5
AA5
A
394 398Right-handed 310
Helix 6
AA6
A
436 441Right-handed alpha
Helix 7
AA7
A
475 479Right-handed alpha
Helix 8
AA8
H
28 32Right-handed 310
Helix 9
AA9
H
73 75Right-handed 310
Helix 10
AB1
H
83 87Right-handed 310
Helix 11
AB2
H
161 163Right-handed 310
Helix 12
AB3
H
192 194Right-handed 310
Helix 13
AB4
H
207 209Right-handed 310
Helix 14
AB5
L
29 31Right-handed 310
Helix 15
AB6
L
79 83Right-handed 310
Helix 16
AB7
L
121 126Right-handed alpha
Helix 17
AB8
L
183 187Right-handed alpha
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There are 13 sheets in PDB entry 8VGP. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4,

There are 7 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
296 301first strand
Strand 2
A
308 314anti-parallel
Strand 3
A
322 328anti-parallel
Strand 4
A
486 493anti-parallel
Strand 5
A
369 376anti-parallel
Strand 6
A
382 392anti-parallel
Strand 7
A
401 404anti-parallel
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There are 7 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
346 347first strand
Strand 2
A
353 354anti-parallel
Strand 3
A
322 328anti-parallel
Strand 4
A
486 493anti-parallel
Strand 5
A
369 376anti-parallel
Strand 6
A
382 392anti-parallel
Strand 7
A
407 408anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
453 454first strand
Strand 2
A
473 474anti-parallel
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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
H
3 7first strand
Strand 2
H
18 25anti-parallel
Strand 3
H
77 82anti-parallel
Strand 4
H
68 72anti-parallel
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There are 6 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
H
11 12first strand
Strand 2
H
107 111parallel
Strand 3
H
88 96anti-parallel
Strand 4
H
33 39anti-parallel
Strand 5
H
45 52anti-parallel
Strand 6
H
56 59anti-parallel
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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
H
11 12first strand
Strand 2
H
107 111parallel
Strand 3
H
88 96anti-parallel
Strand 4
H
100 103anti-parallel
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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
H
124 131first strand
Strand 2
H
139 149anti-parallel
Strand 3
H
181 190anti-parallel
Strand 4
H
168 170anti-parallel
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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
H
124 131first strand
Strand 2
H
139 149anti-parallel
Strand 3
H
181 190anti-parallel
Strand 4
H
174 175anti-parallel
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There are 3 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
H
155 159first strand
Strand 2
H
200 205anti-parallel
Strand 3
H
210 215anti-parallel
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There are 3 strands in AB1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
L
4 6first strand
Strand 2
L
19 28anti-parallel
Strand 3
L
62 75anti-parallel
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There are 6 strands in AB2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
L
10 14first strand
Strand 2
L
102 107parallel
Strand 3
L
85 90anti-parallel
Strand 4
L
33 38anti-parallel
Strand 5
L
45 49anti-parallel
Strand 6
L
53 54anti-parallel
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There are 4 strands in AB3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
L
114 118first strand
Strand 2
L
129 139anti-parallel
Strand 3
L
173 182anti-parallel
Strand 4
L
159 163anti-parallel
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There are 4 strands in AB4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
L
153 154first strand
Strand 2
L
145 150anti-parallel
Strand 3
L
191 197anti-parallel
Strand 4
L
205 210anti-parallel
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